bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0005252
HIT000071744
(
AF152318
)
Representative transcript
(Protocadherin gamma-A1 isoform 1 precursor.)
genome : 140,710,252 - 140,892,546 (182,295)
query : 1 - 4,602 (4,602/4,602)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, extr_plas 13, plas 9, E.R. 2, pero 2, golg 2,
E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AY574008
Mus
sp. (Mouse) : BC054813
Pongo
sp. (Orangutan) : CR858209
Canis
sp. (Dog) : ENSCAFT00000009853
Gallus
sp. (Chicken) : ENSGALT00000004187
Oryzias
sp. (Medaka) : ENSORLT00000005193
Macaca
sp. (Macaque) : XM_001092586
Pan
sp. (Chimpanzee) : XM_001147757
Bos
sp. (Cow) : XM_001254475
Monodelphis
sp. (Opossum) : XM_001377930
Equus
sp. (Horse) : XM_001502164
Danio
sp. (Zebrafish) : XM_001918509
HIX0005252
HIT000071748
(
AF152322
)
(Protocadherin gamma-A2 isoform 1 precursor.)
genome : 140,718,539 - 140,892,546 (174,008)
query : 1 - 4,605 (4,605/4,605)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, extr_plas 10.5, E.R. 8, plas 6, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000328862
(
AB208927
)
(Protocadherin gamma-A3; PCDH-gamma-A3; Precursor;)
genome : 140,723,435 - 140,892,538 (169,104)
query : 1 - 4,763 (4,763/4,763)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, extr_plas 12, plas 7, E.R. 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071749
(
AF152323
)
(Protocadherin gamma-A3; PCDH-gamma-A3; Precursor;)
genome : 140,723,601 - 140,892,546 (168,946)
query : 1 - 4,605 (4,605/4,605)
4 exons
identity = 0.999
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, extr_plas 12, plas 7, E.R. 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071813
(
AF152509
)
(Similar to Protocadherin gamma-A3 isoform 2 precursor.)
genome : 140,723,601 - 140,890,750 (167,150)
query : 1 - 2,712 (2,712/2,712)
5 exons
identity = 0.998
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_mito 7.5, nucl 7, plas 6, extr_plas 5,
mito 2.5, extr 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071756
(
AF152330
)
(Protocadherin gamma-B1 isoform 1 precursor.)
genome : 140,729,828 - 140,892,546 (162,719)
query : 1 - 4,590 (4,590/4,590)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12.5, extr_plas 11.5, plas 9.5, E.R. 4, pero 2.5,
nucl 2, E.R._mito 2, cyto_pero 2, E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071750
(
AF152324
)
(Protocadherin gamma-A4 isoform 1 precursor.)
genome : 140,734,768 - 140,892,546 (157,779)
query : 1 - 4,602 (4,602/4,602)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, E.R. 11, plas 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071757
(
AF152331
)
(Protocadherin gamma-B2 isoform 1 precursor.)
genome : 140,739,703 - 140,892,546 (152,844)
query : 1 - 4,602 (4,602/4,602)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 8.5, E.R._golg 8, extr 7, lyso 7, golg 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071751
(
AF152325
)
(Protocadherin gamma-A5 isoform 1 precursor.)
genome : 140,743,898 - 140,892,546 (148,649)
query : 1 - 4,602 (4,602/4,602)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 9, plas 6.5, extr_plas 6, extr 4.5,
E.R._golg 4.5, mito_pero 4, pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000435698
(
BC150172
)
(Protocadherin gamma-B3; PCDH-gamma-B3; Precursor;)
genome : 140,749,831 - 140,892,539 (142,709)
query : 1 - 4,720 (4,720/4,758)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr_plas 10, plas 9.5, extr 9.5, pero 4, lyso 3,
mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071758
(
AF152332
)
(Protocadherin gamma-B3 isoform 1 precursor.)
genome : 140,749,962 - 140,892,546 (142,585)
query : 1 - 4,596 (4,596/4,596)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 10.5, extr_plas 10, plas 8.5, pero 5, lyso 3,
mito 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000329113
(
AB209178
)
(Protocadherin gamma-A6; PCDH-gamma-A6; Precursor;)
genome : 140,753,481 - 140,892,545 (139,065)
query : 1 - 4,774 (4,774/4,774)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, plas 11, E.R. 2, nucl 1, mito 1, pero 1,
lyso 1, mito_pero 1, E.R._golg 1, mito_nucl 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000435515
(
BC146651
)
(Protocadherin gamma-A6 isoform 1 precursor.)
genome : 140,753,492 - 140,892,539 (139,048)
query : 1 - 4,757 (4,757/4,809)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, plas 11, E.R. 2, nucl 1, mito 1, pero 1,
lyso 1, mito_pero 1, E.R._golg 1, mito_nucl 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071752
(
AF152326
)
(Protocadherin gamma-A6 isoform 1 precursor.)
genome : 140,753,651 - 140,892,546 (138,896)
query : 1 - 4,605 (4,605/4,605)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, plas 11, E.R. 2, nucl 1, mito 1, pero 1,
lyso 1, mito_pero 1, E.R._golg 1, mito_nucl 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071753
(
AF152327
)
(Protocadherin gamma-A7 isoform 1 precursor.)
genome : 140,762,467 - 140,892,546 (130,080)
query : 1 - 4,605 (4,605/4,605)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 7.5, extr_plas 7.5, extr 6.5, nucl 4, cyto 3.5,
cyto_mito 3.16667, lyso 3, mito_pero 2.83333, cyto_golg 2.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000328893
(
AB208958
)
(Similar to Protocadherin gamma-A7; PCDH-gamma-A7; Precursor;)
genome : 140,762,576 - 140,892,538 (129,963)
query : 1 - 4,485 (4,485/4,485)
4 exons
identity = 0.999
5'(1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10.5, nucl 8, E.R. 8, cyto_mito 6.33333,
cyto_golg 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071759
(
AF152333
)
(Protocadherin gamma-B4 isoform 1 precursor.)
genome : 140,767,452 - 140,892,546 (125,095)
query : 1 - 4,578 (4,578/4,578)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr_plas 11, E.R. 7, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071754
(
AF152328
)
(Protocadherin gamma-A8 isoform 1 precursor.)
genome : 140,772,381 - 140,892,546 (120,166)
query : 1 - 4,605 (4,605/4,605)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 14, extr 9, E.R. 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071760
(
AF152334
)
(Protocadherin gamma-B5 isoform 1 precursor.)
genome : 140,777,695 - 140,892,546 (114,852)
query : 1 - 4,578 (4,578/4,578)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, extr_plas 11.5, E.R. 7, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071755
(
AF152329
)
(Protocadherin gamma-A9 isoform 1 precursor.)
genome : 140,782,520 - 140,892,546 (110,027)
query : 1 - 4,605 (4,605/4,605)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, extr_plas 13, plas 11, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071761
(
AF152335
)
(Protocadherin gamma-B6 isoform 1 precursor.)
genome : 140,787,770 - 140,892,546 (104,777)
query : 1 - 4,599 (4,599/4,599)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr_plas 9.5, plas 9, extr 8, pero 5, mito 3.5,
cyto_mito 3.5, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071745
(
AF152319
)
(Protocadherin gamma-A10 isoform 1 precursor.)
genome : 140,792,743 - 140,892,546 (99,804)
query : 1 - 4,617 (4,617/4,617)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13.5, extr_plas 12.5, plas 10.5, E.R. 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000053681
(
BC051788
)
(Protocadherin gamma-B7 isoform 1 precursor.)
genome : 140,797,260 - 140,892,513 (95,254)
query : 28 - 4,757 (4,730/4,771)
4 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 0.994
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10, extr_plas 10, extr 8, pero 5, mito 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071762
(
AF152336
)
(Protocadherin gamma-B7 isoform 1 precursor.)
genome : 140,797,427 - 140,892,546 (95,120)
query : 1 - 4,596 (4,596/4,596)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10, extr_plas 10, extr 8, pero 5, mito 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000009462
(
AK026188
)
(Similar to Protocadherin gamma-B7; PCDH-gamma-B7; Precursor;)
genome : 140,797,766 - 140,892,513 (94,748)
query : 1 - 1,719 (1,719/1,735)
3 exons
identity = 0.999
5'(0.998;0.998)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 22, cyto_nucl 5, nucl 4.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000500770
(
BC136781
)
(Protocadherin gamma-A11 isoform 1 precursor.)
genome : 140,800,762 - 140,891,835 (91,074)
query : 1 - 3,936 (3,936/3,936)
4 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11.5, extr_plas 9.5, plas 6.5, E.R. 5.5,
E.R._golg 5.5, golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000503505
(
BC171774
)
(Protocadherin gamma-A11 isoform 1 precursor.)
genome : 140,800,762 - 140,891,835 (91,074)
query : 1 - 3,936 (3,936/3,936)
4 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11.5, extr_plas 9.5, plas 6.5, E.R. 5.5,
E.R._golg 5.5, golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071746
(
AF152320
)
(Protocadherin gamma-A11 isoform 1 precursor.)
genome : 140,800,795 - 140,892,546 (91,752)
query : 1 - 4,614 (4,614/4,614)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11.5, extr_plas 9.5, plas 6.5, E.R. 5.5,
E.R._golg 5.5, golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071808
(
AF152504
)
(Protocadherin gamma-A11 isoform 3 precursor.)
genome : 140,800,795 - 140,890,747 (89,953)
query : 1 - 2,260 (2,260/2,262)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, mito 6.5, lyso 6, pero 4, cyto_mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000000305
(
AB011160
)
(Protocadherin gamma-A12 isoform 1 precursor.)
genome : 140,810,185 - 140,892,546 (82,362)
query : 1 - 4,747 (4,747/4,747)
4 exons
identity = 1.000
5'(1.000;0.989;1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15.5, extr_plas 12.5, plas 8.5, E.R. 4, pero 1.5,
cyto_pero 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071747
(
AF152321
)
(Protocadherin gamma-A12 isoform 1 precursor.)
genome : 140,810,327 - 140,892,546 (82,220)
query : 1 - 4,605 (4,605/4,605)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15.5, extr_plas 12.5, plas 8.5, E.R. 4, pero 1.5,
cyto_pero 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000032835
(
BC006439
)
(Protocadherin gamma-C3 isoform 3.)
genome : 140,855,569 - 140,892,539 (36,971)
query : 1 - 2,319 (2,319/2,336)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR015492 : Protocadherin gamma
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 15, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000038619
(
BC019299
)
(Protocadherin gamma-C3 isoform 1 precursor.)
genome : 140,855,570 - 140,892,539 (36,970)
query : 1 - 4,718 (4,718/4,739)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 13, extr 9, E.R. 7.5, E.R._golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000192062
(
L11373
)
(Protocadherin gamma-C3; PCDH-gamma-C3; Protocadherin-2; Protocadherin-43; PC-43; Precursor;)
genome : 140,855,571 - 140,892,538 (36,968)
query : 2 - 4,688 (4,687/4,688)
4 exons
identity = 0.988
5'(1.000;1.000;0.979)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 13, extr 9, E.R. 7.5, E.R._golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000040259
(
BC027451
)
(Protocadherin gamma-C3 isoform 3.)
genome : 140,855,571 - 140,892,513 (36,943)
query : 1 - 2,291 (2,291/2,305)
4 exons
identity = 1.000
5'(1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR015492 : Protocadherin gamma
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 15, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000040148
(
BC026218
)
(Protocadherin gamma-C3 isoform 1 precursor.)
genome : 140,855,580 - 140,892,539 (36,960)
query : 1 - 4,708 (4,708/4,724)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 13, extr 9, E.R. 7.5, E.R._golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000260897
(
BC063437
)
(Protocadherin gamma-C3 isoform 3.)
genome : 140,855,585 - 140,892,544 (36,960)
query : 1 - 2,308 (2,308/2,323)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR015492 : Protocadherin gamma
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 15, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071763
(
AF152337
)
(Protocadherin gamma-C3; PCDH-gamma-C3; Protocadherin-2; Protocadherin-43; PC-43; Precursor;)
genome : 140,855,684 - 140,892,546 (36,863)
query : 1 - 4,611 (4,611/4,611)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 13, extr 9, E.R. 7.5, E.R._golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000052733
(
BC042650
)
(Similar to Protocadherin gamma-C4; PCDH-gamma-C4; Precursor;)
genome : 140,864,649 - 140,892,539 (27,891)
query : 1 - 3,458 (3,458/3,473)
2 exons
identity = 0.999
5'(0.998)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 11, cyto_mito 7.83333, lyso 6,
extr_plas 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071764
(
AF152338
)
(Protocadherin gamma-C4 isoform 1 precursor.)
genome : 140,864,741 - 140,892,546 (27,806)
query : 1 - 4,623 (4,623/4,623)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr_plas 10.5, plas 9.5, extr 8.5, mito 4, cyto 3,
pero 3, lyso 3, cyto_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000071829
(
AF152525
)
(Protocadherin gamma-C4 isoform 2 precursor.)
genome : 140,864,741 - 140,867,356 (2,616)
query : 1 - 2,616 (2,616/2,616)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 10.5, extr_plas 9.5, plas 7.5, mito 5, lyso 4,
cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000336446
(
BC101035
)
(Protocadherin gamma-C4 isoform 2 precursor.)
genome : 140,864,741 - 140,867,356 (2,616)
query : 1 - 2,616 (2,616/2,616)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 10.5, extr_plas 9.5, plas 7.5, mito 5, lyso 4,
cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000336447
(
BC101037
)
(Protocadherin gamma-C4 isoform 2 precursor.)
genome : 140,864,741 - 140,867,356 (2,616)
query : 1 - 2,615 (2,615/2,615)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 10.5, extr_plas 9.5, plas 7.5, mito 5, lyso 4,
cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000336448
(
BC101038
)
(Protocadherin gamma-C4 isoform 2 precursor.)
genome : 140,864,741 - 140,867,356 (2,616)
query : 1 - 2,616 (2,616/2,616)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 10.5, extr_plas 9.5, plas 7.5, mito 5, lyso 4,
cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000386332
(
BC101036
)
(Similar to Protocadherin gamma-C4 isoform 2 precursor.)
genome : 140,864,744 - 140,867,356 (2,613)
query : 1 - 2,613 (2,613/2,613)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 10, extr_plas 10, plas 8, mito 5, lyso 4, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000340210
(
BC112081
)
(Similar to Protocadherin gamma-C5 isoform 2 precursor.)
genome : 140,868,734 - 140,871,496 (2,763)
query : 1 - 2,763 (2,763/2,763)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR013164 : Cadherin, N-terminal
IPR015492 : Protocadherin gamma
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, plas 7, mito 3, lyso 3, cyto 2, E.R._mito 2,
mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005252
HIT000031863
(
BC004321
)
(Similar to Protocadherin gamma-B4; PCDH-gamma-B4; Cadherin-20; Fibroblast cadherin-2; Precursor;)
genome : 140,890,525 - 140,892,539 (2,015)
query : 1 - 2,015 (2,015/2,034)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR015492 : Protocadherin gamma
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 10, extr 5, cyto_mito 5, cyto_pero 5,
cyto_plas 5, cyto_golg 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
HIX0005253
HIT000201926 (
NM_005219
)
(Protein diaphanous homolog 1 isoform 1.)
genome : 140,894,588 - 140,998,622 (104,035)
query : 1 - 5,790 (5,790/5,804)
27 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.944;1.000;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010465 : DRF autoregulatory
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014767 : Diaphanous autoregulatory
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000397920 (
NM_001079812
)
(Protein diaphanous homolog 1 isoform 2.)
genome : 140,894,588 - 140,998,622 (104,035)
query : 1 - 5,763 (5,763/5,777)
26 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.944;1.000;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010465 : DRF autoregulatory
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014767 : Diaphanous autoregulatory
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000083067
(
AY007129
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,894,588 - 140,896,555 (1,968)
query : 1 - 1,968 (1,968/1,982)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 3.5, cyto_nucl 3, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000023972
(
AL050086
)
(Hypothetical short protein.)
genome : 140,894,588 - 140,895,408 (821)
query : 1 - 821 (821/830)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, extr 10, cyto 7.5, cyto_nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000395964 (
ENST00000389054
)
(Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,894,583 - 140,998,513 (103,931)
query : 1 - 5,650 (5,650/5,650)
26 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010465 : DRF autoregulatory
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014767 : Diaphanous autoregulatory
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000580536 (
ENST00000476339
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,894,583 - 140,904,322 (9,740)
query : 1 - 2,606 (2,606/2,606)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010465 : DRF autoregulatory
IPR014767 : Diaphanous autoregulatory
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto 10, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000106553 (
ENST00000253811
)
(Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,894,589 - 140,998,622 (104,034)
query : 1 - 5,789 (5,789/5,789)
27 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.944;1.000;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000395967 (
ENST00000389057
)
(Protein diaphanous homolog 1 isoform 2.)
genome : 140,894,589 - 140,998,622 (104,034)
query : 1 - 5,762 (5,762/5,762)
26 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.944;1.000;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010465 : DRF autoregulatory
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014767 : Diaphanous autoregulatory
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000481739 (
ENST00000398557
)
(Protein diaphanous homolog 1 isoform 1.)
genome : 140,894,589 - 140,998,622 (104,034)
query : 1 - 5,789 (5,789/5,789)
27 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.944;1.000;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000481743 (
ENST00000398562
)
(Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,894,589 - 140,998,622 (104,034)
query : 1 - 5,717 (5,717/5,717)
27 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.935;1.000;0.965;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000481747 (
ENST00000398566
)
(Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,894,589 - 140,998,622 (104,034)
query : 1 - 5,762 (5,762/5,762)
26 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.944;1.000;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000391713
(
DQ067453
)
(Diaphanous-1;)
genome : 140,894,589 - 140,998,496 (103,908)
query : 1 - 5,692 (5,692/5,692)
26 exons
identity = 0.984
3'(0.969;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.944;0.992;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;0.993;1.000;
0.989;1.000;0.990;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010465 : DRF autoregulatory
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014767 : Diaphanous autoregulatory
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000064266
(
AF051782
)
(Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,894,589 - 140,998,481 (103,893)
query : 1 - 5,635 (5,635/5,635)
27 exons
identity = 0.985
3'(0.970;1.000;0.993;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.969;1.000;
1.000;1.000;1.000;0.935;1.000;0.965;1.000;
1.000;1.000;1.000;1.000;1.000;0.991)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19.5, nucl 18.5, cyto 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000619904 (
ENST00000520569
)
(Diaphanous-1; Fragment;)
genome : 140,894,589 - 140,966,764 (72,176)
query : 1 - 5,495 (5,495/5,495)
25 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010465 : DRF autoregulatory
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014767 : Diaphanous autoregulatory
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 18.5, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000019119
(
AK094264
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,894,589 - 140,904,322 (9,734)
query : 1 - 2,600 (2,600/2,600)
2 exons
identity = 1.000
3'(0.999;1.000)5'
coverage = 1.000
InterPro :
IPR010465 : DRF autoregulatory
IPR014767 : Diaphanous autoregulatory
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12.5, extr 7, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000300498
(
CR621303
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,894,616 - 140,905,629 (11,014)
query : 1 - 2,072 (2,072/2,072)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010465 : DRF autoregulatory
IPR014767 : Diaphanous autoregulatory
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, nucl 12, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0121006
HIT000287191
(
CR607996
)
Representative transcript
(Hypothetical protein.)
genome : 140,894,628 - 140,895,896 (1,269)
query : 1 - 1,269 (1,269/1,269)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 6, nucl 2, mito 2, mito_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0121006)
HIX0005253
HIT000014601
(
AK057994
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,894,724 - 140,905,714 (10,991)
query : 1 - 2,102 (2,102/2,102)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010465 : DRF autoregulatory
IPR014767 : Diaphanous autoregulatory
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 9, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000546385 (
ENST00000448451
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,894,724 - 140,905,714 (10,991)
query : 1 - 2,102 (2,102/2,102)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010465 : DRF autoregulatory
IPR014767 : Diaphanous autoregulatory
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 9, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000329417
(
AB209482
)
Representative transcript
(Protein diaphanous homolog 1 isoform 1.)
genome : 140,894,990 - 140,998,563 (103,574)
query : 1 - 5,329 (5,329/5,329)
27 exons
identity = 0.996
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.944;1.000;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;0.992;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010465 : DRF autoregulatory
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014767 : Diaphanous autoregulatory
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AB025226
Mus
sp. (Mouse) : BC070412
Danio
sp. (Zebrafish) : BC078320
Canis
sp. (Dog) : ENSCAFT00000009962
Oryzias
sp. (Medaka) : ENSORLT00000005174
Pongo
sp. (Orangutan) : ENSPPYT00000018486
Takifugu
sp. (Fugu) : SINFRUT00000182265
Rattus
sp. (Rat) : XM_001065947
Monodelphis
sp. (Opossum) : XM_001377955
Equus
sp. (Horse) : XM_001502063
Pan
sp. (Chimpanzee) : XR_023032
Bos
sp. (Cow) : XR_028406
HIX0005253
HIT000033200
(
BC007411
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,895,495 - 140,914,002 (18,508)
query : 33 - 2,294 (2,262/2,312)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.986
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR010465 : DRF autoregulatory
IPR014767 : Diaphanous autoregulatory
IPR015425 : Actin-binding FH2
GO :
0003779 : Molecular Function : actin binding
0016043 : Biological Process : cellular component organization
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 14.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000617433 (
ENST00000518047
)
(Protein diaphanous homolog 1 isoform 2.)
genome : 140,895,542 - 140,998,481 (102,940)
query : 1 - 4,659 (4,659/4,659)
26 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010465 : DRF autoregulatory
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014767 : Diaphanous autoregulatory
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000495819
(
AK301195
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,896,050 - 140,953,293 (57,244)
query : 1 - 2,064 (2,064/2,064)
12 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.944;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010465 : DRF autoregulatory
IPR014767 : Diaphanous autoregulatory
IPR015425 : Actin-binding FH2
GO :
0003779 : Molecular Function : actin binding
0016043 : Biological Process : cellular component organization
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 16.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000572699 (
ENST00000468119
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,896,139 - 140,904,337 (8,199)
query : 1 - 619 (619/619)
3 exons
identity = 0.995
3'(1.000;1.000;0.970)5'
coverage = 1.000
InterPro :
IPR010465 : DRF autoregulatory
IPR014767 : Diaphanous autoregulatory
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, mito 12, cyto_nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000390565
(
BC131603
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,896,183 - 140,905,652 (9,470)
query : 7 - 533 (527/537)
3 exons
identity = 0.994
3'(0.997;1.000;0.958)5'
coverage = 0.981
InterPro :
IPR010465 : DRF autoregulatory
IPR014767 : Diaphanous autoregulatory
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15, cyto 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000387547
(
BC117257
)
(Diaphanous-1; Fragment;)
genome : 140,896,366 - 140,998,499 (102,134)
query : 1 - 3,859 (3,859/3,859)
26 exons
identity = 0.994
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.944;0.996;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010465 : DRF autoregulatory
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014767 : Diaphanous autoregulatory
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000501868
(
BC143413
)
(Protein diaphanous homolog 1 isoform 1.)
genome : 140,896,366 - 140,998,499 (102,134)
query : 1 - 3,889 (3,889/3,889)
27 exons
identity = 0.994
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.944;0.996;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010465 : DRF autoregulatory
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014767 : Diaphanous autoregulatory
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000501869
(
BC143414
)
(Diaphanous-1; Fragment;)
genome : 140,896,368 - 140,998,499 (102,132)
query : 1 - 3,940 (3,940/3,942)
28 exons
identity = 0.994
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.944;0.996;1.000;
1.000;1.000;1.000;0.935;1.000;0.965;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010465 : DRF autoregulatory
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014767 : Diaphanous autoregulatory
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000620774 (
ENST00000521457
)
(Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,896,366 - 140,998,499 (102,134)
query : 1 - 3,857 (3,857/3,857)
26 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR009408 : Formin Homology 1
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 18.5, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000253208
(
AY363395
)
(Diaphanous-1; Fragment;)
genome : 140,896,418 - 140,998,481 (102,064)
query : 1 - 3,819 (3,819/3,819)
27 exons
identity = 0.994
3'(1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;0.944;1.000;1.000;0.985;
1.000;1.000;0.935;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010465 : DRF autoregulatory
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014767 : Diaphanous autoregulatory
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18.5, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000100238
(
BT007318
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,896,419 - 140,909,241 (12,823)
query : 1 - 1,214 (1,214/1,215)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 14.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000426688
(
AK307822
)
(Diaphanous-1; Fragment;)
genome : 140,908,096 - 140,963,157 (55,062)
query : 1 - 2,646 (2,646/2,646)
18 exons
identity = 0.992
3'(1.000;1.000;1.000;1.000;0.990;0.944;1.000;
1.000;1.000;1.000;1.000;0.935;1.000;0.965;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR009408 : Formin Homology 1
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12.5, nucl 11.5, pero 2, cysk 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000595270 (
ENST00000491754
)
(Similar to Uncharacterized protein; Fragment;)
genome : 140,908,111 - 140,940,268 (32,158)
query : 1 - 557 (557/557)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR015425 : Actin-binding FH2
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 9, nucl 8, cyto 2, pero 2, cyto_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000598349 (
ENST00000494967
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,908,112 - 140,914,055 (5,944)
query : 1 - 629 (629/629)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003104 : Actin-binding FH2/DRF autoregulatory
IPR015425 : Actin-binding FH2
GO :
0003779 : Molecular Function : actin binding
0016043 : Biological Process : cellular component organization
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, mito 10, cyto_nucl 9, extr 5, E.R._mito 5,
mito_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000617861 (
ENST00000518484
)
(Similar to Uncharacterized protein;)
genome : 140,908,367 - 140,937,421 (29,055)
query : 1 - 546 (546/546)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR015425 : Actin-binding FH2
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 15.5, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000645139 (
ENST00000546094
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,913,948 - 140,998,622 (84,675)
query : 1 - 2,676 (2,676/2,676)
18 exons
identity = 0.993
3'(1.000;0.960;1.000;1.000;1.000;1.000;1.000;
0.935;1.000;0.965;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR009408 : Formin Homology 1
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014768 : GTPase-binding/formin homology 3
IPR015425 : Actin-binding FH2
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 19, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000391712
(
DQ067452
)
(Diaphanous-1; Fragment;)
genome : 140,913,958 - 140,953,568 (39,611)
query : 1 - 677 (677/687)
3 exons
identity = 0.990
3'(1.000;0.944;1.000)5'
coverage = 1.000
InterPro :
IPR009408 : Formin Homology 1
IPR015425 : Actin-binding FH2
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000006619
(
AK023345
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,913,959 - 140,960,455 (46,497)
query : 4 - 1,847 (1,844/1,847)
11 exons
identity = 0.988
3'(1.000;0.944;0.999;1.000;1.000;1.000;1.000;
0.935;1.000;0.965;0.993)5'
coverage = 0.998
InterPro :
IPR009408 : Formin Homology 1
IPR010472 : Diaphanous FH3
IPR010473 : Diaphanous GTPase-binding
IPR014768 : GTPase-binding/formin homology 3
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 8, E.R._mito 7.33333, mito 7, E.R. 6.5,
mito_pero 5.33333, cyto_pero 5.33333, extr 5, cyto_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0032453
HIT000096949
(
BC041908
)
Representative transcript
(Hypothetical short protein.)
genome : 140,937,878 - 140,944,830 (6,953)
query : 1 - 2,480 (2,480/2,495)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 12, golg 2, nucl 1.5, cyto_nucl 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032453)
HIX0032453
HIT000602605 (
ENST00000502205
)
(Hypothetical short protein.)
genome : 140,937,878 - 140,944,830 (6,953)
query : 1 - 2,480 (2,480/2,480)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 12, golg 2, nucl 1.5, cyto_nucl 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032453)
HIX0032453
HIT000660269 (
NR_038333
)
(Hypothetical short protein.)
genome : 140,937,878 - 140,944,827 (6,950)
query : 1 - 2,477 (2,477/2,477)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 12, golg 2, nucl 1.5, cyto_nucl 1.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032453)
HIX0005253
HIT000253190
(
AY360322
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,951,579 - 140,953,568 (1,990)
query : 1 - 539 (539/539)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR009408 : Formin Homology 1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 16.5, nucl 8.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000046927
(
AK127054
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,956,132 - 140,959,805 (3,674)
query : 1 - 3,673 (3,673/3,673)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
InterPro :
IPR010472 : Diaphanous FH3
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, extr 7, nucl 5.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000498915
(
AK304291
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,957,060 - 140,998,566 (41,507)
query : 3 - 1,182 (1,180/1,182)
11 exons
identity = 0.989
3'(1.000;0.935;1.000;0.965;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR010472 : Diaphanous FH3
IPR014768 : GTPase-binding/formin homology 3
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 3, cyto 3, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000622384 (
ENST00000523100
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,957,060 - 140,998,566 (41,507)
query : 1 - 1,180 (1,180/1,180)
11 exons
identity = 0.989
3'(1.000;0.935;1.000;0.965;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010472 : Diaphanous FH3
IPR014768 : GTPase-binding/formin homology 3
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 3, cyto 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000576886 (
ENST00000472516
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,957,556 - 140,958,696 (1,141)
query : 1 - 508 (508/508)
3 exons
identity = 0.992
3'(1.000;1.000;0.913)5'
coverage = 1.000
InterPro :
IPR010472 : Diaphanous FH3
IPR014768 : GTPase-binding/formin homology 3
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0016043 : Biological Process : cellular component organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, cyto_nucl 8.5, extr 8, cyto 7.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0005253
HIT000623564 (
ENST00000524301
)
(Similar to Protein diaphanous homolog 1; Diaphanous-related formin-1; DRF1;)
genome : 140,963,086 - 140,967,052 (3,967)
query : 1 - 561 (561/561)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010473 : Diaphanous GTPase-binding
IPR016024 : Armadillo-type fold
GO :
0003779 : Molecular Function : actin binding
0005488 : Molecular Function : binding
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, extr 7, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005253)
HIX0206487
HIT000599442 (
ENST00000496103
)
Representative transcript
(Ubiquitin subgroup family protein.)
genome : 140,968,502 - 140,968,709 (208)
query : 1 - 208 (208/208)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR000626 : Ubiquitin
IPR019955 : Ubiquitin supergroup
IPR019956 : Ubiquitin subgroup
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, mito 9, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206487)
HIX0164596
HIT000519974 (
ENST00000422040
)
Representative transcript
(Conserved hypothetical protein.)
genome : 140,997,981 - 141,006,048 (8,068)
query : 1 - 622 (622/622)
3 exons
identity = 0.998
5'(1.000;0.992;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 12, extr 10, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0164596)
HIX0200752
HIT000200673 (
NM_003883
)
(Histone deacetylase 3.)
genome : 141,000,443 - 141,016,423 (15,981)
query : 1 - 1,945 (1,945/1,965)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.999
EC number :
EC 3.5.1.98
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 13.3333, cyto_plas 11.3333,
nucl 4.5, cysk 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000221000
(
U66914
)
(Similar to Uncharacterized protein; Fragment;)
genome : 141,000,443 - 141,016,368 (15,926)
query : 1 - 1,891 (1,891/1,911)
15 exons
identity = 0.999
3'(0.998;0.994;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.999
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, nucl 9, cysk 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000221271
(
U75697
)
(Histone deacetylase 3.)
genome : 141,000,443 - 141,016,404 (15,962)
query : 7 - 1,935 (1,929/1,954)
15 exons
identity = 0.995
3'(0.991;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.962)5'
coverage = 0.987
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 13.3333, cyto_plas 11.3333,
nucl 4.5, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000061799
(
AF005482
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98; RPD3-2; SMAP45;)
genome : 141,000,443 - 141,014,729 (14,287)
query : 14 - 1,962 (1,949/1,981)
13 exons
identity = 0.995
3'(0.991;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.989)5'
coverage = 0.984
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, cyto_nucl 10.8333, mito 9, cyto_pero 8.66667,
nucl 4.5, E.R._mito 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000063506
(
AF039703
)
(Histone deacetylase 3.)
genome : 141,000,448 - 141,016,379 (15,932)
query : 1 - 1,897 (1,897/1,920)
15 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.993;0.988;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 13.3333, cyto_plas 11.3333,
nucl 4.5, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000029776
(
BC000614
)
Representative transcript
(Histone deacetylase 3.)
genome : 141,000,447 - 141,016,412 (15,966)
query : 1 - 1,930 (1,930/1,948)
15 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.993;1.000;
1.000)5'
coverage = 0.999
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 13.3333, cyto_plas 11.3333,
nucl 4.5, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AF039753
Rattus
sp. (Rat) : AF321131
Mus
sp. (Mouse) : AK145158
Danio
sp. (Zebrafish) : BC044543
Bos
sp. (Cow) : BC111247
Tetraodon
sp. (Tetraodon) : CR692507
Pongo
sp. (Orangutan) : CR858777
Oryzias
sp. (Medaka) : ENSORLT00000011295
Takifugu
sp. (Fugu) : SINFRUT00000133251
Macaca
sp. (Macaque) : XM_001091458
Macaca
sp. (Macaque) : XM_001093955
Pan
sp. (Chimpanzee) : XM_001151110
Monodelphis
sp. (Opossum) : XM_001368787
Equus
sp. (Horse) : XM_001503978
Canis
sp. (Dog) : XM_535219
HIX0200752
HIT000221270
(
U75696
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98; RPD3-2; SMAP45;)
genome : 141,000,443 - 141,016,198 (15,756)
query : 104 - 1,929 (1,826/1,941)
14 exons
identity = 0.996
3'(0.991;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.993;1.000)5'
coverage = 0.946
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 11.5, extr 7, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000116984 (
ENST00000305264
)
(Histone deacetylase 3.)
genome : 141,000,443 - 141,016,423 (15,981)
query : 1 - 1,945 (1,945/1,945)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000574068 (
ENST00000469550
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98; RPD3-2; SMAP45;)
genome : 141,000,443 - 141,014,731 (14,289)
query : 1 - 1,952 (1,952/1,952)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, extr 7, nucl 7, cyto_nucl 7, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000294801
(
CR615606
)
(Histone deacetylase 3.)
genome : 141,000,445 - 141,016,405 (15,961)
query : 1 - 1,925 (1,925/1,925)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 13.3333, cyto_plas 11.3333,
nucl 4.5, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000283032
(
CR603837
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98; RPD3-2; SMAP45;)
genome : 141,000,453 - 141,005,833 (5,381)
query : 1 - 1,022 (1,022/1,022)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto_nucl 12, cyto 10, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000303146
(
CR623951
)
(Histone deacetylase 3.)
genome : 141,000,463 - 141,016,405 (15,943)
query : 1 - 1,907 (1,907/1,907)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 13.3333, cyto_plas 11.3333,
nucl 4.5, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000298117
(
CR618922
)
(Histone deacetylase 3.)
genome : 141,000,468 - 141,016,399 (15,932)
query : 1 - 1,896 (1,896/1,896)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 13.3333, cyto_plas 11.3333,
nucl 4.5, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000303535
(
CR624340
)
(Histone deacetylase 3.)
genome : 141,000,473 - 141,016,406 (15,934)
query : 1 - 1,898 (1,898/1,898)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 13.3333, cyto_plas 11.3333,
nucl 4.5, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000272161
(
CR592966
)
(Histone deacetylase 3.)
genome : 141,000,477 - 141,016,404 (15,928)
query : 1 - 1,892 (1,892/1,892)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 13.3333, cyto_plas 11.3333,
nucl 4.5, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000273219
(
CR594024
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98; RPD3-2; SMAP45;)
genome : 141,000,477 - 141,008,191 (7,715)
query : 1 - 1,220 (1,220/1,220)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 8.5, cyto 7.5, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000573738 (
ENST00000469207
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98; RPD3-2; SMAP45;)
genome : 141,000,492 - 141,005,637 (5,146)
query : 1 - 829 (829/829)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, nucl 5, cyto_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000564686 (
ENST00000459727
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98; RPD3-2; SMAP45;)
genome : 141,001,052 - 141,007,757 (6,706)
query : 1 - 524 (524/524)
6 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;0.987)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000595101 (
ENST00000491581
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98;)
genome : 141,004,429 - 141,007,503 (3,075)
query : 1 - 777 (777/777)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17.5, nucl 15.5, cyto 10.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000590364 (
ENST00000486618
)
(Similar to Histone deacetylase 3; Fragment;)
genome : 141,004,775 - 141,006,052 (1,278)
query : 1 - 711 (711/711)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 11, extr 8, mito 7, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000572139 (
ENST00000467533
)
(Similar to Histone deacetylase 3; Fragment;)
genome : 141,005,268 - 141,009,539 (4,272)
query : 1 - 663 (663/663)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 5.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000622634 (
ENST00000523353
)
(Similar to Histone deacetylase 3; Fragment;)
genome : 141,005,592 - 141,016,409 (10,818)
query : 1 - 437 (437/437)
6 exons
identity = 0.989
3'(1.000;0.938;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 5.5, cyto_nucl 4, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000579784 (
ENST00000475549
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98;)
genome : 141,005,593 - 141,006,011 (419)
query : 1 - 297 (297/297)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000595895 (
ENST00000492407
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98; RPD3-2; SMAP45;)
genome : 141,005,761 - 141,008,825 (3,065)
query : 1 - 767 (767/782)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.981
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 8.5, cyto_pero 5.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000622372 (
ENST00000523088
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98; RPD3-2; SMAP45;)
genome : 141,005,800 - 141,016,400 (10,601)
query : 1 - 699 (699/699)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 10.5, extr 9, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000618825 (
ENST00000519474
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98; RPD3-2; SMAP45;)
genome : 141,007,459 - 141,016,405 (8,947)
query : 1 - 736 (736/736)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, extr 11, cyto 9.5, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000580917 (
ENST00000476739
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98; RPD3-2; SMAP45;)
genome : 141,007,466 - 141,008,791 (1,326)
query : 1 - 422 (422/422)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000598847 (
ENST00000495485
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98;)
genome : 141,008,126 - 141,016,392 (8,267)
query : 1 - 797 (797/797)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 11, nucl 3, mito 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000594350 (
ENST00000490808
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98;)
genome : 141,008,172 - 141,009,309 (1,138)
query : 1 - 605 (605/605)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto_nucl 8, nucl 7.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000254626
(
AY429538
)
(Similar to Uncharacterized protein; Fragment;)
genome : 141,008,741 - 141,016,331 (7,591)
query : 1 - 358 (358/358)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 14, nucl 6.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000254625
(
AY429537
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98;)
genome : 141,008,743 - 141,016,329 (7,587)
query : 1 - 241 (241/241)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
IPR003084 : Histone deacetylase
GO :
0004407 : Molecular Function : histone deacetylase activity
0005634 : Cellular Component : nucleus
0016575 : Biological Process : histone deacetylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11, nucl 8.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0200752
HIT000576368 (
ENST00000471968
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98;)
genome : 141,008,833 - 141,014,423 (5,591)
query : 1 - 529 (529/529)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0005258
HIT000621980 (
ENST00000522690
)
(Similar to Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3; Centaurin-delta-3; Cnt-d3;)
genome : 141,013,251 - 141,060,040 (46,790)
query : 1 - 2,842 (2,842/2,842)
17 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR001660 : Sterile alpha motif domain
IPR001849 : Pleckstrin homology domain
IPR010993 : Sterile alpha motif homology
IPR011510 : Sterile alpha motif, type 2
IPR011993 : Pleckstrin homology-type
IPR013761 : Sterile alpha motif-type
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 15, nucl 11, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005258)
HIX0200752
HIT000595991 (
ENST00000492506
)
(Similar to Histone deacetylase 3; HD3; EC=3.5.1.98;)
genome : 141,015,476 - 141,016,410 (935)
query : 1 - 830 (830/830)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000286 : Histone deacetylase superfamily
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 16.5, extr 5, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200752)
HIX0005256
HIT000215107 (
NM_173828
)
(RELT-like protein 2.)
genome : 141,016,517 - 141,020,631 (4,115)
query : 1 - 2,583 (2,583/2,599)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR022248 : Tumour necrosis factor receptor 19L
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000559611 (
NM_001130029
)
(RELT-like protein 2.)
genome : 141,016,517 - 141,020,631 (4,115)
query : 1 - 2,155 (2,155/2,171)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR022248 : Tumour necrosis factor receptor 19L
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000011503
(
AK054889
)
(RELT-like protein 2;)
genome : 141,016,517 - 141,020,630 (4,114)
query : 1 - 2,329 (2,329/2,329)
5 exons
identity = 0.998
5'(0.998;1.000;1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, extr 7, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000114727 (
ENST00000297164
)
(RELT-like protein 2.)
genome : 141,016,517 - 141,020,630 (4,114)
query : 1 - 2,582 (2,582/2,582)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 6, cyto_nucl 5.66667, cyto 5.5,
nucl 4.5, cyto_pero 4.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000542716 (
ENST00000444782
)
(RELT-like protein 2.)
genome : 141,016,517 - 141,020,630 (4,114)
query : 1 - 2,154 (2,154/2,154)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR022248 : Tumour necrosis factor receptor 19L
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000620006 (
ENST00000520674
)
(RELT-like protein 2;)
genome : 141,016,517 - 141,020,630 (4,114)
query : 1 - 2,329 (2,329/2,329)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, extr 7, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000050927
(
BC027919
)
(Similar to Uncharacterized protein;)
genome : 141,016,572 - 141,020,631 (4,060)
query : 1 - 2,461 (2,461/2,627)
6 exons
identity = 0.999
5'(1.000;1.000;0.995;0.995;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR022248 : Tumour necrosis factor receptor 19L
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000617412 (
ENST00000518025
)
(RELT-like protein 2;)
genome : 141,016,572 - 141,020,631 (4,060)
query : 1 - 2,461 (2,461/2,461)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto_nucl 16, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000279749
(
CR600554
)
(Similar to RELT-like protein 2;)
genome : 141,016,579 - 141,020,585 (4,007)
query : 1 - 1,780 (1,780/1,780)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 14.5, cyto 8, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000620684 (
ENST00000521367
)
(Similar to RELT-like protein 2;)
genome : 141,016,579 - 141,020,585 (4,007)
query : 1 - 1,780 (1,780/1,780)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 14.5, cyto 8, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000252208
(
AY358163
)
(RELT-like protein 2;)
genome : 141,016,593 - 141,020,631 (4,039)
query : 13 - 2,519 (2,507/2,535)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;0.995;0.995;1.000;1.000)3'
coverage = 0.995
InterPro :
IPR022248 : Tumour necrosis factor receptor 19L
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000617186 (
ENST00000517794
)
(Similar to RELT-like protein 2;)
genome : 141,017,004 - 141,019,196 (2,193)
query : 1 - 844 (844/844)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR022248 : Tumour necrosis factor receptor 19L
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000294459
(
CR615264
)
(Similar to RELT-like protein 2;)
genome : 141,017,009 - 141,020,620 (3,612)
query : 1 - 1,419 (1,419/1,419)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 15, cyto 8, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000618226 (
ENST00000518856
)
(Similar to RELT-like protein 2;)
genome : 141,017,009 - 141,020,620 (3,612)
query : 1 - 1,419 (1,419/1,419)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 15, cyto 8, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000260928
(
BC063469
)
(Similar to Uncharacterized protein;)
genome : 141,017,048 - 141,020,631 (3,584)
query : 1 - 1,624 (1,624/1,666)
8 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.989;0.995;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR022248 : Tumour necrosis factor receptor 19L
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000087327
(
BC009560
)
(RELT-like protein 2;)
genome : 141,017,173 - 141,020,631 (3,459)
query : 1 - 1,499 (1,499/1,521)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.995;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000082099
(
AK075064
)
Representative transcript
(RELT-like protein 2.)
genome : 141,017,690 - 141,020,630 (2,941)
query : 1 - 1,409 (1,409/1,409)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.995)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK044097
Rattus
sp. (Rat) : BC089946
Bos
sp. (Cow) : BC112736
Danio
sp. (Zebrafish) : BC115295
Gallus
sp. (Chicken) : CR353410
Equus
sp. (Horse) : ENSECAT00000021347
Macaca
sp. (Macaque) : ENSMMUT00000017649
Pongo
sp. (Orangutan) : ENSPPYT00000018488
Tetraodon
sp. (Tetraodon) : GSTENT00013829001
Monodelphis
sp. (Opossum) : XM_001377986
Pan
sp. (Chimpanzee) : XM_530851
Canis
sp. (Dog) : XM_853140
HIX0200720
HIT000085322
(
AY217346
)
Representative transcript
(FCH and double SH3 domains protein 1.)
genome : 141,018,869 - 141,030,986 (12,118)
query : 1 - 4,320 (4,320/4,333)
20 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, mito 11, cyto_nucl 10.3333,
cyto_mito 7.66667, mito_pero 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK154732
Pongo
sp. (Orangutan) : CR860213
Bos
sp. (Cow) : ENSBTAT00000021194
Canis
sp. (Dog) : ENSCAFT00000010029
Monodelphis
sp. (Opossum) : ENSMODT00000013508
Oryzias
sp. (Medaka) : ENSORLT00000013461
Tetraodon
sp. (Tetraodon) : GSTENT00005747001
Takifugu
sp. (Fugu) : SINFRUT00000153124
Rattus
sp. (Rat) : XM_001066113
Macaca
sp. (Macaque) : XM_001089589
Equus
sp. (Horse) : XM_001917745
Gallus
sp. (Chicken) : XM_425188
Pan
sp. (Chimpanzee) : XM_517998
HIX0200720
HIT000211350 (
NM_033449
)
(FCH and double SH3 domains protein 1.)
genome : 141,018,869 - 141,030,986 (12,118)
query : 1 - 4,320 (4,320/4,333)
20 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001060 : Fps/Fes/Fer/CIP4 homology
IPR001452 : Src homology-3 domain
IPR011511 : Variant SH3
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, mito 11, cyto_nucl 10.3333,
cyto_mito 7.66667, mito_pero 6.33333
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0200720
HIT000533751 (
ENST00000435817
)
(FCH and double SH3 domains protein 1.)
genome : 141,018,870 - 141,030,986 (12,117)
query : 1 - 4,319 (4,319/4,319)
20 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001060 : Fps/Fes/Fer/CIP4 homology
IPR001452 : Src homology-3 domain
IPR011511 : Variant SH3
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, mito 11, cyto_nucl 10.3333,
cyto_mito 7.66667, mito_pero 6.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0200720
HIT000002482
(
AK000007
)
(FCH and double SH3 domains protein 1.)
genome : 141,018,870 - 141,030,970 (12,101)
query : 1 - 4,303 (4,303/4,303)
20 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001060 : Fps/Fes/Fer/CIP4 homology
IPR001452 : Src homology-3 domain
IPR011511 : Variant SH3
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, mito 11, cyto_nucl 10.3333,
cyto_mito 7.66667, mito_pero 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0200720
HIT000046076
(
AK126203
)
(Similar to RELT-like protein 2;)
genome : 141,018,870 - 141,022,188 (3,319)
query : 1 - 3,181 (3,181/3,181)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 9, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0200720
HIT000620075 (
ENST00000520747
)
(Similar to RELT-like protein 2;)
genome : 141,018,870 - 141,022,188 (3,319)
query : 1 - 3,181 (3,181/3,181)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 9, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0200720
HIT000252522
(
AY358478
)
(Similar to FCH and double SH3 domains protein 1;)
genome : 141,018,875 - 141,027,050 (8,176)
query : 1 - 3,934 (3,934/3,934)
11 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001452 : Src homology-3 domain
IPR011511 : Variant SH3
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 13.5, cyto 13.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0200720
HIT000623125 (
ENST00000523856
)
(Similar to RELT-like protein 2;)
genome : 141,018,875 - 141,027,050 (8,176)
query : 1 - 3,932 (3,932/3,932)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001452 : Src homology-3 domain
IPR011511 : Variant SH3
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0005256
HIT000010553
(
AK027281
)
(Similar to Uncharacterized protein;)
genome : 141,018,875 - 141,021,179 (2,305)
query : 1 - 1,737 (1,737/1,737)
2 exons
identity = 0.998
5'(1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 6.5, cyto_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0005256
HIT000619804 (
ENST00000520465
)
(Similar to Uncharacterized protein;)
genome : 141,018,875 - 141,021,179 (2,305)
query : 1 - 1,737 (1,737/1,737)
2 exons
identity = 0.998
5'(0.998;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 6.5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005256)
HIX0200720
HIT000053065
(
BC047016
)
(Similar to Uncharacterized protein;)
genome : 141,020,549 - 141,030,684 (10,136)
query : 6 - 2,582 (2,577/2,660)
19 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR001060 : Fps/Fes/Fer/CIP4 homology
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 11.5, mito 9, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0200720
HIT000067397
(
AF086518
)
(Hypothetical short protein.)
genome : 141,020,551 - 141,020,980 (430)
query : 1 - 430 (430/440)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto_nucl 9.5, cyto 8.5, nucl 7.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0200720
HIT000621430 (
ENST00000522126
)
(Similar to Uncharacterized protein;)
genome : 141,020,549 - 141,030,684 (10,136)
query : 1 - 2,577 (2,577/2,577)
19 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001060 : Fps/Fes/Fer/CIP4 homology
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12.5, cyto 8.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0200720
HIT000622070 (
ENST00000522783
)
(FCH and double SH3 domains protein 1;)
genome : 141,020,554 - 141,030,943 (10,390)
query : 1 - 2,477 (2,477/2,477)
20 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001060 : Fps/Fes/Fer/CIP4 homology
IPR001452 : Src homology-3 domain
IPR011511 : Variant SH3
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 11.3333, mito 9,
cyto_mito 6.66667, mito_pero 5.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0200720
HIT000617546 (
ENST00000518160
)
(Similar to FCH and double SH3 domains protein 1;)
genome : 141,020,776 - 141,022,271 (1,496)
query : 1 - 719 (719/719)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 12, cysk 6, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0200720
HIT000617876 (
ENST00000518499
)
(Similar to FCH and double SH3 domains protein 1;)
genome : 141,024,197 - 141,025,931 (1,735)
query : 1 - 714 (714/714)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001452 : Src homology-3 domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto 7.5, cyto_nucl 6.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0200720
HIT000622051 (
ENST00000522763
)
(Similar to FCH and double SH3 domains protein 1;)
genome : 141,026,075 - 141,027,096 (1,022)
query : 1 - 443 (443/443)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, nucl 12.5, extr 10, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
HIX0200720
HIT000621684 (
ENST00000522386
)
(Similar to FCH and double SH3 domains protein 1;)
genome : 141,026,239 - 141,027,398 (1,160)
query : 1 - 581 (581/581)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 12.5, extr 9, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200720)
AC008781.7
140866602-141026601 F -
NCBI