Clickable map CGI

HIX0031996
HIT000077598 ( AF329369 )
  Representative transcript
  (Pseudogene candidate (Protocadherin beta-5; PCDH-beta-5; Precursor;).)
  genome : 140,619,689 - 140,624,311 (4,623)
  query : 20 - 4,604 (4,585/4,613)
  2 exons
  identity = 0.987
  5'(0.998;0.967)3'
  coverage = 0.998
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 12, cyto_nucl 11.5, nucl 11, cyto 8
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031996)
  Ortholog candidate  ( -> Evola )
    Bos sp. (Cow) : BC149280
    Rattus sp. (Rat) : XM_001056174
    Equus sp. (Horse) : XM_001918033
    Canis sp. (Dog) : XM_844128
    Macaca sp. (Macaque) : XR_010555
    Pan sp. (Chimpanzee) : XR_023015

HIX0031996
HIT000215554 ( NR_001282 )
  (Pseudogene candidate (Protocadherin beta-15; PCDH-beta-15; Precursor;).)
  genome : 140,619,689 - 140,624,311 (4,623)
  query : 1 - 4,623 (4,623/4,632)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  InterPro :
    IPR002126 : Cadherin
    IPR015493 : Protocadherin beta
    IPR015919 : Cadherin-like
  GO :
    0005509 : Molecular Function : calcium ion binding
    0007156 : Biological Process : homophilic cell adhesion
    0016020 : Cellular Component : membrane
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 17, nucl 10.5, cyto_nucl 6, extr 4
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031996)

HIX0206306
eHIT000019068 ( ESTsASS_5_919 )
  Representative transcript
  (Conserved hypothetical protein.)
  genome : 140,620,309 - 140,621,613 (1,305)
  query : 1 - 606 (606/606)
  3 exons
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 11, cyto_nucl 9.33333, cyto 6.5, nucl 6,
    cyto_pero 5.5, mito 5
  ESTs assembly
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0206306)
  ESTs used for assembly :
    AW025845,BE463846

HIX0024802
HIT000431660 ( AK312794 )
  (Protocadherin beta-15; PCDH-beta-15; Precursor;)
  genome : 140,624,917 - 140,627,510 (2,594)
  query : 2 - 2,596 (2,595/2,596)
  1 exon
  identity = 0.998
  5'(0.998)3'
  coverage = 1.000
  InterPro :
    IPR002126 : Cadherin
    IPR013164 : Cadherin, N-terminal
    IPR015493 : Protocadherin beta
    IPR015919 : Cadherin-like
    IPR020894 : Cadherin conserved site
  GO :
    0005509 : Molecular Function : calcium ion binding
    0005886 : Cellular Component : plasma membrane
    0007155 : Biological Process : cell adhesion
    0007156 : Biological Process : homophilic cell adhesion
    0016020 : Cellular Component : membrane
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    E.R. 15, plas 8, extr_plas 8, extr 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0024802)

HIX0024802
HIT000052068 ( BC038797 )
  (Protocadherin beta-15; PCDH-beta-15; Precursor;)
  genome : 140,624,981 - 140,627,743 (2,763)
  query : 1 - 2,763 (2,763/2,815)
  1 exon
  identity = 0.999
  5'(0.999)3'
  coverage = 1.000
  InterPro :
    IPR002126 : Cadherin
    IPR013164 : Cadherin, N-terminal
    IPR015493 : Protocadherin beta
    IPR015919 : Cadherin-like
    IPR020894 : Cadherin conserved site
  GO :
    0005509 : Molecular Function : calcium ion binding
    0005886 : Cellular Component : plasma membrane
    0007155 : Biological Process : cell adhesion
    0007156 : Biological Process : homophilic cell adhesion
    0016020 : Cellular Component : membrane
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    E.R. 15, plas 8, extr_plas 8, extr 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0024802)

HIX0024802
HIT000104360 ( ENST00000231173 )
  (Protocadherin beta-15 precursor.)
  genome : 140,624,981 - 140,627,742 (2,762)
  query : 1 - 2,762 (2,762/2,762)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 15.5, cyto_nucl 13.5, cyto 8.5, extr 8
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0024802)

HIX0024802
HIT000207475 ( NM_018935 )
  (Protocadherin beta-15 precursor.)
  genome : 140,625,147 - 140,627,802 (2,656)
  query : 1 - 2,656 (2,656/2,661)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 0.998
  InterPro :
    IPR002126 : Cadherin
    IPR013164 : Cadherin, N-terminal
    IPR015493 : Protocadherin beta
    IPR015919 : Cadherin-like
    IPR020894 : Cadherin conserved site
  GO :
    0005509 : Molecular Function : calcium ion binding
    0005886 : Cellular Component : plasma membrane
    0007155 : Biological Process : cell adhesion
    0007156 : Biological Process : homophilic cell adhesion
    0016020 : Cellular Component : membrane
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    E.R. 15, plas 8, extr_plas 8, extr 6
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0024802)

HIX0024802
HIT000074183 ( AF217742 )
  Representative transcript
  (Protocadherin beta-15 precursor.)
  genome : 140,625,147 - 140,627,800 (2,654)
  query : 1 - 2,654 (2,654/2,654)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    E.R. 15, plas 8, extr_plas 8, extr 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0024802)
  Ortholog candidate  ( -> Evola )
    Mus sp. (Mouse) : BC094239
    Pongo sp. (Orangutan) : ENSPPYT00000018479
    Macaca sp. (Macaque) : XM_001092125
    Pan sp. (Chimpanzee) : XM_001146685
    Equus sp. (Horse) : XM_001502191
    Canis sp. (Dog) : XM_544306

HIX0024802
HIT000071798 ( AF152494 )
  (Protocadherin beta-15 precursor.)
  genome : 140,625,147 - 140,627,510 (2,364)
  query : 1 - 2,364 (2,364/2,364)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    E.R. 15, plas 8, extr_plas 8, extr 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0024802)

AC005752.1
140618359-140634358 F -
NCBI

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )