Clickable map CGI

HIX0005252
HIT000071744 ( AF152318 )
  genome : 140,710,252 - 140,892,546 (182,295)
  query : 1 - 4,602 (4,602/4,602)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071748 ( AF152322 )
  genome : 140,718,539 - 140,892,546 (174,008)
  query : 1 - 4,605 (4,605/4,605)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000328862 ( AB208927 )
  genome : 140,723,435 - 140,892,538 (169,104)
  query : 1 - 4,763 (4,763/4,763)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071749 ( AF152323 )
  genome : 140,723,601 - 140,892,546 (168,946)
  query : 1 - 4,605 (4,605/4,605)
  4 exons
  identity = 0.999
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071813 ( AF152509 )
  genome : 140,723,601 - 140,890,750 (167,150)
  query : 1 - 2,712 (2,712/2,712)
  5 exons
  identity = 0.998
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071756 ( AF152330 )
  genome : 140,729,828 - 140,892,546 (162,719)
  query : 1 - 4,590 (4,590/4,590)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071750 ( AF152324 )
  genome : 140,734,768 - 140,892,546 (157,779)
  query : 1 - 4,602 (4,602/4,602)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071757 ( AF152331 )
  genome : 140,739,703 - 140,892,546 (152,844)
  query : 1 - 4,602 (4,602/4,602)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071751 ( AF152325 )
  genome : 140,743,898 - 140,892,546 (148,649)
  query : 1 - 4,602 (4,602/4,602)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000435698 ( BC150172 )
  genome : 140,749,831 - 140,892,539 (142,709)
  query : 1 - 4,720 (4,720/4,758)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071758 ( AF152332 )
  genome : 140,749,962 - 140,892,546 (142,585)
  query : 1 - 4,596 (4,596/4,596)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000329113 ( AB209178 )
  genome : 140,753,481 - 140,892,545 (139,065)
  query : 1 - 4,774 (4,774/4,774)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000435515 ( BC146651 )
  genome : 140,753,492 - 140,892,539 (139,048)
  query : 1 - 4,757 (4,757/4,809)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071752 ( AF152326 )
  genome : 140,753,651 - 140,892,546 (138,896)
  query : 1 - 4,605 (4,605/4,605)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071753 ( AF152327 )
  genome : 140,762,467 - 140,892,546 (130,080)
  query : 1 - 4,605 (4,605/4,605)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000328893 ( AB208958 )
  genome : 140,762,576 - 140,892,538 (129,963)
  query : 1 - 4,485 (4,485/4,485)
  4 exons
  identity = 0.999
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071759 ( AF152333 )
  genome : 140,767,452 - 140,892,546 (125,095)
  query : 1 - 4,578 (4,578/4,578)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071754 ( AF152328 )
  genome : 140,772,381 - 140,892,546 (120,166)
  query : 1 - 4,605 (4,605/4,605)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071760 ( AF152334 )
  genome : 140,777,695 - 140,892,546 (114,852)
  query : 1 - 4,578 (4,578/4,578)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071755 ( AF152329 )
  genome : 140,782,520 - 140,892,546 (110,027)
  query : 1 - 4,605 (4,605/4,605)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071761 ( AF152335 )
  genome : 140,787,770 - 140,892,546 (104,777)
  query : 1 - 4,599 (4,599/4,599)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071745 ( AF152319 )
  genome : 140,792,743 - 140,892,546 (99,804)
  query : 1 - 4,617 (4,617/4,617)
  4 exons
  identity = 1.000
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000053681 ( BC051788 )
  (Protocadherin gamma-B7 isoform 1 precursor.)
  genome : 140,797,260 - 140,892,513 (95,254)
  query : 28 - 4,757 (4,730/4,771)
  4 exons
  identity = 0.999
  5'(0.999)3'
  coverage = 0.994
  InterPro :
    IPR002126 : Cadherin
    IPR013164 : Cadherin, N-terminal
    IPR015492 : Protocadherin gamma
    IPR015919 : Cadherin-like
    IPR020894 : Cadherin conserved site
  GO :
    0005509 : Molecular Function : calcium ion binding
    0005886 : Cellular Component : plasma membrane
    0007155 : Biological Process : cell adhesion
    0007156 : Biological Process : homophilic cell adhesion
    0016020 : Cellular Component : membrane
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 10, extr_plas 10, extr 8, pero 5, mito 3, lyso 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071762 ( AF152336 )
  (Protocadherin gamma-B7 isoform 1 precursor.)
  genome : 140,797,427 - 140,892,546 (95,120)
  query : 1 - 4,596 (4,596/4,596)
  4 exons
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 10, extr_plas 10, extr 8, pero 5, mito 3, lyso 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071827 ( AF152523 )
  (Protocadherin gamma-B7 isoform 2 precursor.)
  genome : 140,797,427 - 140,799,853 (2,427)
  query : 1 - 2,427 (2,427/2,427)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 8, mito 7.5, extr_plas 7.5, plas 5, pero 5,
    lyso 5, cyto_mito 4.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000009462 ( AK026188 )
  genome : 140,797,766 - 140,892,513 (94,748)
  query : 1 - 1,719 (1,719/1,735)
  3 exons
  identity = 0.999
  5'()3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000500770 ( BC136781 )
  (Protocadherin gamma-A11 isoform 1 precursor.)
  genome : 140,800,762 - 140,891,835 (91,074)
  query : 1 - 3,936 (3,936/3,936)
  4 exons
  identity = 0.999
  5'(1.000)3'
  coverage = 1.000
  InterPro :
    IPR002126 : Cadherin
    IPR013164 : Cadherin, N-terminal
    IPR015492 : Protocadherin gamma
    IPR015919 : Cadherin-like
    IPR020894 : Cadherin conserved site
  GO :
    0005509 : Molecular Function : calcium ion binding
    0005886 : Cellular Component : plasma membrane
    0007155 : Biological Process : cell adhesion
    0007156 : Biological Process : homophilic cell adhesion
    0016020 : Cellular Component : membrane
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 11.5, extr_plas 9.5, plas 6.5, E.R. 5.5,
    E.R._golg 5.5, golg 4.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000503505 ( BC171774 )
  (Protocadherin gamma-A11 isoform 1 precursor.)
  genome : 140,800,762 - 140,891,835 (91,074)
  query : 1 - 3,936 (3,936/3,936)
  4 exons
  identity = 0.999
  5'(1.000)3'
  coverage = 1.000
  InterPro :
    IPR002126 : Cadherin
    IPR013164 : Cadherin, N-terminal
    IPR015492 : Protocadherin gamma
    IPR015919 : Cadherin-like
    IPR020894 : Cadherin conserved site
  GO :
    0005509 : Molecular Function : calcium ion binding
    0005886 : Cellular Component : plasma membrane
    0007155 : Biological Process : cell adhesion
    0007156 : Biological Process : homophilic cell adhesion
    0016020 : Cellular Component : membrane
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 11.5, extr_plas 9.5, plas 6.5, E.R. 5.5,
    E.R._golg 5.5, golg 4.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071746 ( AF152320 )
  (Protocadherin gamma-A11 isoform 1 precursor.)
  genome : 140,800,795 - 140,892,546 (91,752)
  query : 1 - 4,614 (4,614/4,614)
  4 exons
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 11.5, extr_plas 9.5, plas 6.5, E.R. 5.5,
    E.R._golg 5.5, golg 4.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071808 ( AF152504 )
  (Protocadherin gamma-A11 isoform 3 precursor.)
  genome : 140,800,795 - 140,890,747 (89,953)
  query : 1 - 2,260 (2,260/2,262)
  4 exons
  identity = 1.000
  5'(1.000)3'
  coverage = 0.999
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 14, mito 6.5, lyso 6, pero 4, cyto_mito 4
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071809 ( AF152505 )
  (Protocadherin gamma-A11 isoform 2 precursor.)
  genome : 140,800,795 - 140,803,308 (2,514)
  query : 1 - 2,514 (2,514/2,514)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 11.5, extr_plas 9, lyso 5, mito 4, E.R. 4,
    E.R._mito 4
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0200783
HIT000071833 ( AF152529 )
  Representative transcript
  (Similar to Protocadherin gamma B8; Protocadherin gamma subfamily B, 8;)
  genome : 140,805,853 - 140,807,825 (1,973)
  query : 1 - 1,973 (1,973/1,973)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  InterPro :
    IPR002126 : Cadherin
    IPR015492 : Protocadherin gamma
    IPR015919 : Cadherin-like
    IPR020894 : Cadherin conserved site
  GO :
    0005509 : Molecular Function : calcium ion binding
    0005886 : Cellular Component : plasma membrane
    0007155 : Biological Process : cell adhesion
    0007156 : Biological Process : homophilic cell adhesion
    0016020 : Cellular Component : membrane
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 13, E.R. 7, extr_plas 7, pero 4
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0200783)
  Ortholog candidate  ( -> Evola )
    Rattus sp. (Rat) : AY574008
    Mus sp. (Mouse) : BC054813
    Canis sp. (Dog) : ENSCAFT00000009846
    Monodelphis sp. (Opossum) : XM_001377930
    Equus sp. (Horse) : XM_001917758

HIX0005252
HIT000252990 ( AY358946 )
  (Protocadherin gamma-A12 isoform 2 precursor.)
  genome : 140,809,958 - 140,813,405 (3,448)
  query : 1 - 3,313 (3,313/3,313)
  2 exons
  identity = 0.996
  5'(0.996;0.996)3'
  coverage = 1.000
  InterPro :
    IPR002126 : Cadherin
    IPR013164 : Cadherin, N-terminal
    IPR015492 : Protocadherin gamma
    IPR015919 : Cadherin-like
    IPR020894 : Cadherin conserved site
  GO :
    0005509 : Molecular Function : calcium ion binding
    0005886 : Cellular Component : plasma membrane
    0007155 : Biological Process : cell adhesion
    0007156 : Biological Process : homophilic cell adhesion
    0016020 : Cellular Component : membrane
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 23, E.R. 4, pero 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000000305 ( AB011160 )
  (Protocadherin gamma-A12 isoform 1 precursor.)
  genome : 140,810,185 - 140,892,546 (82,362)
  query : 1 - 4,747 (4,747/4,747)
  4 exons
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  InterPro :
    IPR002126 : Cadherin
    IPR013164 : Cadherin, N-terminal
    IPR015492 : Protocadherin gamma
    IPR015919 : Cadherin-like
    IPR020894 : Cadherin conserved site
  GO :
    0005509 : Molecular Function : calcium ion binding
    0005886 : Cellular Component : plasma membrane
    0007155 : Biological Process : cell adhesion
    0007156 : Biological Process : homophilic cell adhesion
    0016020 : Cellular Component : membrane
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 15.5, extr_plas 12.5, plas 8.5, E.R. 4, pero 1.5,
    cyto_pero 1.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071747 ( AF152321 )
  (Protocadherin gamma-A12 isoform 1 precursor.)
  genome : 140,810,327 - 140,892,546 (82,220)
  query : 1 - 4,605 (4,605/4,605)
  4 exons
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 15.5, extr_plas 12.5, plas 8.5, E.R. 4, pero 1.5,
    cyto_pero 1.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000071810 ( AF152506 )
  (Protocadherin gamma-A12 isoform 2 precursor.)
  genome : 140,810,327 - 140,812,789 (2,463)
  query : 1 - 2,463 (2,463/2,463)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 13, extr_plas 11, plas 7, pero 7, E.R. 2, lyso 2
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

HIX0005252
HIT000057939 ( AB000897 )
  (Similar to Protocadherin gamma-A12; PCDH-gamma-A12; Cadherin-21; Fibroblast cadherin-3; Precursor;)
  genome : 140,811,257 - 140,811,658 (402)
  query : 1 - 402 (402/402)
  1 exon
  identity = 0.995
  5'(0.995)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment

AC005618.1
140799239-140815238 F +
NCBI

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )