bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0017743
HIT000014760
(
AK058154
)
(Conserved hypothetical protein.)
genome : 8,747,123 - 8,748,446 (1,324)
query : 1 - 1,344 (1,344/1,344)
1 exon
identity = 0.984
5'(0.984)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 6, nucl 3, cyto 3, cyto_nucl 3,
E.R._mito 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017743)
HIX0205983
HIT000613568 (
ENST00000514043
)
Representative transcript
(Hypothetical short protein.)
genome : 8,747,123 - 8,747,759 (637)
query : 1 - 464 (464/464)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, nucl 4, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205983)
HIX0017743
HIT000022348
(
AK097494
)
Representative transcript
(Similar to T. brucei spp.-specific protein;)
genome : 8,747,129 - 8,749,439 (2,311)
query : 1 - 2,331 (2,331/2,331)
1 exon
identity = 0.991
5'(0.991)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 10.5, nucl 9.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017743)
AC209005.2
8740281-8756280 F +
NCBI
L2a
MLT1C
MER1A
L2c
THE1B
MIRb
L2c
L2c
MIR3
MIRb
(CA)n
(CA)n
(CA)n
(CATA)n
(CA)n
MIRb
L1MCa
L1MCa
AluY
L1MCa
L1MCa
AluSz
L1MC
MER44A
L1MC
L1MC4a
MER51A