Clickable map CGI

HIX0031673
HIT000092542 ( BC032043 )
  Representative transcript
  (Non-protein coding transcript.)
  genome : 29,119,930 - 29,204,392 (84,463)
  query : 1 - 758 (758/773)
  3 exons
  identity = 0.996
  5'(0.997)3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031673)

HIX0031673
HIT000603597 ( ENST00000503299 )
  (Non-protein coding transcript.)
  genome : 29,119,930 - 29,204,392 (84,463)
  query : 1 - 758 (758/758)
  3 exons
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031673)

HIX0205889
HIT000611938 ( ENST00000512268 )
  (Hypothetical short protein.)
  genome : 29,216,020 - 29,222,784 (6,765)
  query : 1 - 575 (575/575)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 20, cyto 6.5, cyto_nucl 5, nucl 2.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0205889)

HIX0205976
HIT000613405 ( ENST00000513866 )
  (Conserved hypothetical protein.)
  genome : 29,408,722 - 29,409,634 (913)
  query : 1 - 913 (913/913)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 15, cyto 9.5, cyto_nucl 6.5, mito 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0205976)

HIX0206061
HIT000614848 ( ENST00000515413 )
  (Conserved hypothetical protein.)
  genome : 29,467,323 - 29,469,472 (2,150)
  query : 1 - 1,815 (1,815/1,815)
  2 exons
  identity = 0.997
  3'(1.000;0.995)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 20, nucl 4, cyto 3, mito_nucl 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0206061)

HIX0205891
HIT000612026 ( ENST00000512363 )
  (Conserved hypothetical protein.)
  genome : 29,750,379 - 29,751,722 (1,344)
  query : 1 - 1,344 (1,344/1,344)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 15, cyto 13, cyto_nucl 8
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0205891)

HIX0120817
HIT000474291 ( ENST00000390756 )
  (Hypothetical short protein.)
  genome : 29,751,818 - 29,751,932 (115)
  query : 1 - 115 (115/115)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0120817)

HIX0205828
HIT000610690 ( ENST00000510945 )
  (Non-protein coding transcript.)
  genome : 29,909,281 - 29,909,413 (133)
  query : 1 - 133 (133/133)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0205828)

HIX0205300
HIT000576963 ( ENST00000472594 )
  (Ribosomal protein S3Ae family protein.)
  genome : 29,964,266 - 29,965,380 (1,115)
  query : 1 - 777 (777/777)
  2 exons
  identity = 0.994
  3'(0.958;0.997)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 15.5, cyto_nucl 12, cyto 7.5, mito 5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0205300)

HIX0205517
HIT000605418 ( ENST00000505272 )
  (Peptidase C1A, papain C-terminal domain containing protein.)
  genome : 30,008,573 - 30,009,938 (1,366)
  query : 1 - 992 (992/992)
  2 exons
  identity = 0.997
  3'(1.000;0.997)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 16, mito 11, cyto 3.5, cyto_nucl 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0205517)

HIX0031340
HIT000210649 ( NM_032456 )
  (Protocadherin-7 isoform b precursor.)
  genome : 30,722,030 - 30,726,957 (4,928)
  query : 1 - 4,928 (4,928/4,928)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 22, extr 4, E.R. 4
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031340)

HIX0031340
HIT000210650 ( NM_032457 )
  (Protocadherin-7; Brain-heart protocadherin; BH-Pcdh; Precursor;)
  genome : 30,722,037 - 31,148,423 (426,387)
  query : 1 - 8,704 (8,704/8,704)
  3 exons
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 19, E.R. 5.5, extr 4, E.R._golg 3.5
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031340)

HIX0031340
HIT000655067 ( NM_001173523 )
  (Protocadherin-7; Brain-heart protocadherin; BH-Pcdh; Precursor;)
  genome : 30,722,037 - 31,148,423 (426,387)
  query : 1 - 8,728 (8,728/8,728)
  3 exons
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 19, E.R. 5.5, extr 4, E.R._golg 3.5
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031340)

HIX0031340
HIT000315016 ( ENST00000361762 )
  (Protocadherin-7; Brain-heart protocadherin; BH-Pcdh; Precursor;)
  genome : 30,722,037 - 30,733,590 (11,554)
  query : 1 - 5,398 (5,398/5,398)
  2 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 22, extr 4, E.R. 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031340)

HIX0031340
HIT000199478 ( NM_002589 )
  (Protocadherin-7; Brain-heart protocadherin; BH-Pcdh; Precursor;)
  genome : 30,722,037 - 30,732,838 (10,802)
  query : 1 - 4,646 (4,646/4,646)
  2 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 22, extr 4, E.R. 4
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031340)

HIX0024543
HIT000050738 ( BC020338 )
  Representative transcript
  (Hypothetical protein.)
  genome : 30,722,134 - 30,723,133 (1,000)
  query : 1 - 1,000 (1,000/1,000)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 13, mito 13, cyto 3.5, cyto_nucl 3.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0024543)
  Ortholog candidate  ( -> Evola )
    Pan sp. (Chimpanzee) : XM_001135515

HIX0031340
HIT000058091 ( AB006757 )
  Representative transcript
  (Protocadherin-7 isoform c precursor.)
  genome : 30,722,192 - 31,144,728 (422,537)
  query : 1 - 4,714 (4,714/4,714)
  4 exons
  identity = 0.995
  5'(0.992;0.996)3'
  coverage = 1.000
  InterPro :
    IPR002126 : Cadherin
    IPR013164 : Cadherin, N-terminal
    IPR013585 : Protocadherin
    IPR015919 : Cadherin-like
    IPR020894 : Cadherin conserved site
  GO :
    0005509 : Molecular Function : calcium ion binding
    0005886 : Cellular Component : plasma membrane
    0007155 : Biological Process : cell adhesion
    0007156 : Biological Process : homophilic cell adhesion
    0016020 : Cellular Component : membrane
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 20, E.R. 5.5, extr 4, E.R._golg 3.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031340)
  Ortholog candidate  ( -> Evola )
    Macaca sp. (Macaque) : AB220445
    Mus sp. (Mouse) : AK039737
    Rattus sp. (Rat) : AY690615
    Gallus sp. (Chicken) : CR388971
    Oryzias sp. (Medaka) : ENSORLT00000008748
    Pongo sp. (Orangutan) : ENSPPYT00000017043
    Tetraodon sp. (Tetraodon) : GSTENT00013316001
    Tetraodon sp. (Tetraodon) : GSTENT00033034001
    Takifugu sp. (Fugu) : SINFRUT00000159191
    Pan sp. (Chimpanzee) : XM_001134816
    Monodelphis sp. (Opossum) : XM_001362170
    Equus sp. (Horse) : XM_001917343
    Canis sp. (Dog) : XM_545961
    Danio sp. (Zebrafish) : XM_678029
    Bos sp. (Cow) : XM_864701

HIX0031340
HIT000642536 ( ENST00000543491 )
  (Protocadherin-7; Brain-heart protocadherin; BH-Pcdh; Precursor;)
  genome : 30,723,045 - 31,144,471 (421,427)
  query : 1 - 3,768 (3,768/3,768)
  3 exons
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 19, E.R. 5.5, extr 4, E.R._golg 3.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031340)

HIX0031340
HIT000611576 ( ENST00000511884 )
  (Protocadherin-7; Brain-heart protocadherin; BH-Pcdh; Precursor;)
  genome : 30,723,977 - 31,144,728 (420,752)
  query : 1 - 3,069 (3,069/3,069)
  3 exons
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    cyto 10.5, nucl 9, E.R. 7, cyto_mito 6, pero 2,
    golg 2
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031340)

HIX0031340
HIT000607835 ( ENST00000507864 )
  (Protocadherin-7; Brain-heart protocadherin; BH-Pcdh; Precursor;)
  genome : 30,724,672 - 30,726,218 (1,547)
  query : 1 - 340 (340/340)
  2 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 15, cysk 13, cyto_nucl 9.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031340)

HIX0024732
HIT000050207 ( AK130936 )
  Representative transcript
  (Conserved hypothetical protein.)
  genome : 30,729,935 - 30,731,607 (1,673)
  query : 1 - 1,673 (1,673/1,673)
  1 exon
  identity = 0.998
  5'(0.998)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 18, mito 10.5, mito_pero 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0024732)

HIX0205738
HIT000609017 ( ENST00000509136 )
  (Non-protein coding transcript.)
  genome : 30,777,879 - 30,795,592 (17,714)
  query : 1 - 180 (180/180)
  3 exons
  identity = 1.000
  3'(1.000;1.000;1.000)5'
  coverage = 1.000
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0205738)

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )