bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0030693
HIT000094891
(
BC037568
)
(Eomesodermin homolog; T-box brain protein 2; T-brain-2; TBR-2;)
genome : 27,757,887 - 27,763,803 (5,917)
query : 1 - 2,816 (2,816/2,840)
6 exons
identity = 0.998
3'(0.999;1.000;1.000;1.000;1.000;0.993)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 16.5, cyto 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000202133 (
NM_005442
)
(Eomesodermin homolog.)
genome : 27,757,887 - 27,763,785 (5,899)
query : 1 - 2,735 (2,735/2,756)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 16.5, cyto 10
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000091065
(
BC025363
)
(Similar to Eomesodermin homolog; T-box brain protein 2; T-brain-2; TBR-2;)
genome : 27,757,887 - 27,761,811 (3,925)
query : 1 - 1,849 (1,849/1,870)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 16, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000547533 (
ENST00000449599
)
(Eomesodermin homolog; T-box brain protein 2; T-brain-2; TBR-2;)
genome : 27,757,887 - 27,763,803 (5,917)
query : 1 - 2,810 (2,810/2,829)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 16.5, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000114263 (
ENST00000295743
)
(Eomesodermin homolog.)
genome : 27,757,888 - 27,763,785 (5,898)
query : 1 - 2,734 (2,734/2,734)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 16.5, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000499779
(
AK316166
)
(Similar to Eomesodermin homolog; T-box brain protein 2; T-brain-2; TBR-2;)
genome : 27,758,000 - 27,764,206 (6,207)
query : 1 - 2,084 (2,084/2,084)
6 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 10, extr 7, mito 5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000636561 (
ENST00000537516
)
(Similar to Eomesodermin homolog; T-box brain protein 2; T-brain-2; TBR-2;)
genome : 27,758,000 - 27,764,206 (6,207)
query : 1 - 2,084 (2,084/2,084)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 10, extr 7, mito 5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000492013
(
AK297389
)
Representative transcript
(Similar to Eomesodermin homolog; T-box brain protein 2; T-brain-2; TBR-2;)
genome : 27,758,000 - 27,764,204 (6,205)
query : 1 - 2,100 (2,100/2,100)
7 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 9, extr 7, mito 5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : AB269787
Mus
sp. (Mouse) : AK134951
Rattus
sp. (Rat) : BC085124
Bos
sp. (Cow) : DQ126147
Oryzias
sp. (Medaka) : ENSORLT00000002879
Pongo
sp. (Orangutan) : ENSPPYT00000016347
Tetraodon
sp. (Tetraodon) : GSTENT00032620001
Takifugu
sp. (Fugu) : SINFRUT00000140844
Macaca
sp. (Macaque) : XM_001093085
Equus
sp. (Horse) : XM_001493356
Gallus
sp. (Chicken) : XM_426003
Pan
sp. (Chimpanzee) : XM_526157
Canis
sp. (Dog) : XM_542755
HIX0030693
HIT000494123
(
AK299499
)
(Similar to Eomesodermin homolog; T-box brain protein 2; T-brain-2; TBR-2;)
genome : 27,758,122 - 27,764,198 (6,077)
query : 1 - 2,360 (2,360/2,360)
7 exons
identity = 0.994
3'(0.998;1.000;1.000;1.000;0.994;0.985;0.972)5'
coverage = 1.000
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16, cyto 6.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000634758 (
ENST00000535713
)
(Similar to Eomesodermin homolog; T-box brain protein 2; T-brain-2; TBR-2;)
genome : 27,758,122 - 27,764,198 (6,077)
query : 1 - 2,354 (2,354/2,354)
7 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.958)5'
coverage = 1.000
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16, cyto 6.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000494319
(
AK299695
)
(Similar to Eomesodermin homolog; T-box brain protein 2; T-brain-2; TBR-2;)
genome : 27,758,418 - 27,764,203 (5,786)
query : 2 - 1,748 (1,747/1,748)
7 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;0.993;0.968)5'
coverage = 0.999
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 5, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000390614
(
BC131712
)
(Similar to Eomesodermin homolog; T-box brain protein 2; T-brain-2; TBR-2;)
genome : 27,758,441 - 27,763,785 (5,345)
query : 5 - 2,018 (2,014/2,018)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, nucl 7.5, cyto_nucl 7, mito 6, lyso 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000492085
(
AK297461
)
(Similar to Eomesodermin-like protein; Fragment;)
genome : 27,758,512 - 27,764,204 (5,693)
query : 1 - 2,241 (2,241/2,241)
4 exons
identity = 0.993
3'(1.000;0.938;1.000;0.995)5'
coverage = 1.000
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16.5, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000636454 (
ENST00000537409
)
(Similar to Eomesodermin-like protein; Fragment;)
genome : 27,758,512 - 27,764,204 (5,693)
query : 1 - 2,235 (2,235/2,235)
4 exons
identity = 0.996
3'(1.000;0.938;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16.5, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000059016
(
AB031038
)
(Eomesodermin homolog; T-box brain protein 2; T-brain-2; TBR-2;)
genome : 27,758,562 - 27,763,785 (5,224)
query : 1 - 2,060 (2,060/2,061)
6 exons
identity = 0.989
3'(0.997;1.000;1.000;1.000;0.948;0.986)5'
coverage = 1.000
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16, cyto 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
HIX0030693
HIT000566382 (
ENST00000461503
)
(Similar to Eomesodermin homolog; T-box brain protein 2; T-brain-2; TBR-2;)
genome : 27,760,355 - 27,764,202 (3,848)
query : 1 - 589 (589/589)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001699 : Transcription factor, T-box
IPR008967 : p53-like transcription factor, DNA-binding
IPR018186 : Transcription factor, T-box, conserved site
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 10, nucl 5.5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030693)
AC098614.3
27753046-27769045 F +
NCBI
MIRc
AluSx
(T)n
(T)n
(A)n
(CCG)n
(CGG)n
(T)n
(CATTA)n
(CAT)n