bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0001933
pHIT000004011 ( pHIT000004011 )
(Similar to 39S ribosomal protein L33, mitochondrial; L33mt; MRP-L33;)
genome : 27,994,426 - 28,002,349 (7,924)
query : 1 - 519 (519/519)
3 exons
InterPro :
IPR001705 : Ribosomal protein L33
IPR011332 : Ribosomal protein, zinc-binding domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, nucl 8.5, cyto_nucl 8, cyto 6.5,
E.R._mito 6.5
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
CAGE tag :
H04BA94H1102,H05BA07I1801,H05BF21B1707
H06BA78F0504,H08BA08I0511
HIX0001933
HIT000266307
(
BC090047
)
(39S ribosomal protein L33, mitochondrial isoform b.)
genome : 27,994,584 - 28,002,601 (8,018)
query : 1 - 404 (404/452)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, extr 8, nucl 4, extr_plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000201619 (
NM_004891
)
(39S ribosomal protein L33, mitochondrial; L33mt; MRP-L33;)
genome : 27,994,584 - 28,002,608 (8,025)
query : 1 - 518 (518/528)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR001705 : Ribosomal protein L33
IPR011332 : Ribosomal protein, zinc-binding domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, mito_nucl 15.5, nucl 11
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000213230 (
NM_145330
)
(39S ribosomal protein L33, mitochondrial isoform b.)
genome : 27,994,584 - 28,002,608 (8,025)
query : 1 - 411 (411/421)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, extr 8, nucl 4, extr_plas 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000114391 (
ENST00000296102
)
(39S ribosomal protein L33, mitochondrial; L33mt; MRP-L33;)
genome : 27,994,584 - 28,002,608 (8,025)
query : 1 - 518 (518/518)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001705 : Ribosomal protein L33
IPR011332 : Ribosomal protein, zinc-binding domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, mito_nucl 15.5, nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000360945 (
ENST00000379666
)
(39S ribosomal protein L33, mitochondrial isoform b.)
genome : 27,994,584 - 28,002,608 (8,025)
query : 1 - 411 (411/411)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, extr 8, nucl 4, extr_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000038993
(
BC020834
)
(39S ribosomal protein L33, mitochondrial isoform a.)
genome : 27,994,597 - 28,002,599 (8,003)
query : 1 - 496 (496/530)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.994
InterPro :
IPR001705 : Ribosomal protein L33
IPR011332 : Ribosomal protein, zinc-binding domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, mito_nucl 15.5, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000546361 (
ENST00000448427
)
(Similar to BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;)
genome : 27,994,606 - 28,210,954 (216,349)
query : 1 - 527 (527/527)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 11.8333, cyto_pero 10, extr 6,
mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000001740
(
AF047440
)
(39S ribosomal protein L33, mitochondrial isoform a.)
genome : 27,994,611 - 28,002,598 (7,988)
query : 2 - 482 (481/512)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.994
InterPro :
IPR001705 : Ribosomal protein L33
IPR011332 : Ribosomal protein, zinc-binding domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, mito_nucl 15.5, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000576579 (
ENST00000472192
)
(Non-protein coding transcript.)
genome : 27,994,611 - 27,995,722 (1,112)
query : 1 - 238 (238/238)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000266168
(
BC087846
)
(39S ribosomal protein L33, mitochondrial isoform b.)
genome : 27,994,620 - 28,002,600 (7,981)
query : 1 - 367 (367/385)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, extr 8, nucl 4, extr_plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000034390
(
BC009475
)
(39S ribosomal protein L33, mitochondrial isoform a.)
genome : 27,994,633 - 28,002,599 (7,967)
query : 2 - 461 (460/491)
4 exons
identity = 0.998
5'(0.971;1.000;1.000;1.000)3'
coverage = 0.994
InterPro :
IPR001705 : Ribosomal protein L33
IPR011332 : Ribosomal protein, zinc-binding domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, mito_nucl 15.5, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000267738
(
CR456888
)
(39S ribosomal protein L33, mitochondrial isoform a.)
genome : 27,994,645 - 28,002,349 (7,705)
query : 1 - 198 (198/198)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001705 : Ribosomal protein L33
IPR011332 : Ribosomal protein, zinc-binding domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, mito_nucl 15.5, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000268986
(
CR542117
)
(39S ribosomal protein L33, mitochondrial isoform a.)
genome : 27,994,645 - 28,002,346 (7,702)
query : 1 - 195 (195/195)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001705 : Ribosomal protein L33
IPR011332 : Ribosomal protein, zinc-binding domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, mito_nucl 15.5, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000587859 (
ENST00000483992
)
(Similar to 39S ribosomal protein L33, mitochondrial isoform b.)
genome : 27,994,842 - 28,002,598 (7,757)
query : 1 - 729 (729/729)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000580741 (
ENST00000476552
)
(Similar to 39S ribosomal protein L33, mitochondrial; L33mt; MRP-L33;)
genome : 27,995,057 - 28,002,564 (7,508)
query : 1 - 587 (587/587)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001705 : Ribosomal protein L33
IPR011332 : Ribosomal protein, zinc-binding domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0117678
HIT000019295
(
AK094440
)
Representative transcript
(Similar to 39S ribosomal protein L33, mitochondrial isoform b.)
genome : 28,000,699 - 28,002,599 (1,901)
query : 1 - 1,901 (1,901/1,901)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 6, mito 4.5, mito_pero 4, pero 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0117678)
HIX0019886
HIT000116079 (
ENST00000302188
)
(Ribokinase.)
genome : 28,004,266 - 28,113,223 (108,958)
query : 1 - 1,196 (1,196/1,196)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 10.5, cyto_nucl 9, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
HIX0019886
HIT000208624 (
NM_022128
)
(Ribokinase.)
genome : 28,004,266 - 28,113,223 (108,958)
query : 1 - 1,196 (1,196/1,196)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.7.1.15
KEGG pathway :
00030 : Pentose phosphate pathway (39)
InterPro :
IPR002139 : Ribokinase
IPR002173 : Carbohydrate/puine kinase, PfkB, conserved site
IPR011611 : Carbohydrate/purine kinase
IPR011877 : Ribokinase, bacterial
GO :
0004747 : Molecular Function : ribokinase activity
0006014 : Biological Process : D-ribose metabolic process
0016773 : Molecular Function : phosphotransferase activity, alcohol group as acceptor
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
HIX0019886
HIT000247494
(
AJ404857
)
Representative transcript
(Ribokinase.)
genome : 28,004,266 - 28,113,223 (108,958)
query : 1 - 1,196 (1,196/1,196)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR002139 : Ribokinase
IPR002173 : Carbohydrate/puine kinase, PfkB, conserved site
IPR011611 : Carbohydrate/purine kinase
IPR011877 : Ribokinase, bacterial
GO :
0004747 : Molecular Function : ribokinase activity
0006014 : Biological Process : D-ribose metabolic process
0016773 : Molecular Function : phosphotransferase activity, alcohol group as acceptor
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK138939
Danio
sp. (Zebrafish) : BC071473
Gallus
sp. (Chicken) : CR407434
Tetraodon
sp. (Tetraodon) : CR686573
Equus
sp. (Horse) : ENSECAT00000021899
Oryzias
sp. (Medaka) : ENSORLT00000022803
Pongo
sp. (Orangutan) : ENSPPYT00000014566
Pan
sp. (Chimpanzee) : ENSPTRT00000021930
Takifugu
sp. (Fugu) : SINFRUT00000168963
Rattus
sp. (Rat) : XM_001062109
Macaca
sp. (Macaque) : XM_001100564
Monodelphis
sp. (Opossum) : XM_001380521
Canis
sp. (Dog) : XM_532917
Bos
sp. (Cow) : XM_590939
HIX0019886
HIT000038001
(
BC017425
)
(Ribokinase.)
genome : 28,004,360 - 28,113,263 (108,904)
query : 3 - 1,144 (1,142/1,171)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.997
InterPro :
IPR002139 : Ribokinase
IPR002173 : Carbohydrate/puine kinase, PfkB, conserved site
IPR011611 : Carbohydrate/purine kinase
IPR011877 : Ribokinase, bacterial
GO :
0004747 : Molecular Function : ribokinase activity
0006014 : Biological Process : D-ribose metabolic process
0016773 : Molecular Function : phosphotransferase activity, alcohol group as acceptor
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
HIX0019886
HIT000434935
(
AY643715
)
(Ribokinase; EC=2.7.1.15;)
genome : 28,004,354 - 28,113,255 (108,902)
query : 1 - 1,140 (1,140/1,140)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.984;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR002139 : Ribokinase
IPR002173 : Carbohydrate/puine kinase, PfkB, conserved site
IPR011611 : Carbohydrate/purine kinase
IPR011877 : Ribokinase, bacterial
GO :
0004747 : Molecular Function : ribokinase activity
0006014 : Biological Process : D-ribose metabolic process
0016773 : Molecular Function : phosphotransferase activity, alcohol group as acceptor
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
HIX0019886
HIT000057556
(
BX648909
)
(Similar to Ribokinase; EC=2.7.1.15;)
genome : 28,004,440 - 28,113,233 (108,794)
query : 2 - 2,152 (2,151/2,179)
9 exons
identity = 0.998
3'(1.000;0.995;1.000;0.988;1.000;1.000;1.000;
0.999;1.000)5'
coverage = 0.998
InterPro :
IPR002139 : Ribokinase
IPR002173 : Carbohydrate/puine kinase, PfkB, conserved site
IPR011611 : Carbohydrate/purine kinase
IPR011877 : Ribokinase, bacterial
GO :
0004747 : Molecular Function : ribokinase activity
0006014 : Biological Process : D-ribose metabolic process
0016773 : Molecular Function : phosphotransferase activity, alcohol group as acceptor
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 14, nucl 4.5, extr 3, mito 2,
E.R. 2, golg 2, E.R._mito 2, E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
HIX0019886
HIT000288225
(
CR609030
)
(Similar to Ribokinase; EC=2.7.1.15;)
genome : 28,004,439 - 28,070,970 (66,532)
query : 1 - 796 (796/796)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002139 : Ribokinase
IPR002173 : Carbohydrate/puine kinase, PfkB, conserved site
IPR011611 : Carbohydrate/purine kinase
IPR011877 : Ribokinase, bacterial
GO :
0004747 : Molecular Function : ribokinase activity
0006014 : Biological Process : D-ribose metabolic process
0016773 : Molecular Function : phosphotransferase activity, alcohol group as acceptor
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, nucl 6, mito 6, mito_nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
HIX0019886
HIT000547312 (
ENST00000449378
)
(Similar to Ribokinase; EC=2.7.1.15;)
genome : 28,004,440 - 28,113,233 (108,794)
query : 1 - 2,151 (2,151/2,151)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002139 : Ribokinase
IPR002173 : Carbohydrate/puine kinase, PfkB, conserved site
IPR011611 : Carbohydrate/purine kinase
IPR011877 : Ribokinase, bacterial
GO :
0004747 : Molecular Function : ribokinase activity
0006014 : Biological Process : D-ribose metabolic process
0016773 : Molecular Function : phosphotransferase activity, alcohol group as acceptor
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 8, cyto_nucl 8, cyto_plas 8,
cyto_golg 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
HIX0019886
HIT000495613
(
AK300989
)
(Similar to Ribokinase; EC=2.7.1.15;)
genome : 28,032,166 - 28,113,217 (81,052)
query : 1 - 1,548 (1,548/1,548)
8 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR002139 : Ribokinase
IPR011611 : Carbohydrate/purine kinase
IPR011877 : Ribokinase, bacterial
GO :
0004747 : Molecular Function : ribokinase activity
0006014 : Biological Process : D-ribose metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 28, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
HIX0019886
HIT000556119 (
ENST00000458185
)
(Similar to Ribokinase; EC=2.7.1.15;)
genome : 28,032,554 - 28,066,028 (33,475)
query : 1 - 735 (735/735)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR011611 : Carbohydrate/purine kinase
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, extr 6, nucl 3, pero 2, mito 1.5,
E.R._mito 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
HIX0019886
HIT000542273 (
ENST00000444339
)
(Similar to Ribokinase; EC=2.7.1.15;)
genome : 28,032,847 - 28,113,263 (80,417)
query : 1 - 912 (912/912)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR002139 : Ribokinase
IPR011611 : Carbohydrate/purine kinase
IPR011877 : Ribokinase, bacterial
GO :
0004747 : Molecular Function : ribokinase activity
0006014 : Biological Process : D-ribose metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 28, extr 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
HIX0019886
HIT000551346 (
ENST00000453412
)
(Similar to Ribokinase; EC=2.7.1.15;)
genome : 28,081,368 - 28,113,548 (32,181)
query : 1 - 630 (630/630)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
HIX0019886
HIT000657758 (
NR_028308
)
(Similar to Ribokinase; EC=2.7.1.15;)
genome : 28,112,324 - 28,113,981 (1,658)
query : 1 - 1,658 (1,658/1,667)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 10, extr 7, nucl 6.5, mito 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
HIX0019886
HIT000088274
(
BC014088
)
(Similar to Ribokinase; EC=2.7.1.15;)
genome : 28,112,694 - 28,113,955 (1,262)
query : 1 - 1,262 (1,262/1,280)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 10, extr 7, nucl 6.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019886)
HIX0001933
HIT000534858 (
ENST00000436924
)
(Similar to BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;)
genome : 28,112,808 - 28,248,252 (135,445)
query : 1 - 874 (874/874)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.8333, cyto 10.5, cyto_pero 7.5,
mito_nucl 7.5, nucl 7, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000319656 (
NM_199193
)
(BRCA1-A complex subunit BRE isoform 3.)
genome : 28,113,482 - 28,561,768 (448,287)
query : 1 - 1,930 (1,930/1,932)
14 exons
identity = 0.999
5'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 9.83333, mito 9.5, nucl 8.5, cyto 8,
mito_pero 7.33333, cyto_pero 6.83333, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000319657 (
NM_199194
)
(BRCA1-A complex subunit BRE isoform 2.)
genome : 28,113,482 - 28,561,768 (448,287)
query : 1 - 1,858 (1,858/1,860)
13 exons
identity = 0.999
5'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, mito_pero 10, cyto 8, pero 4.5, extr 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000134675 (
ENST00000342045
)
(BRCA1-A complex subunit BRE isoform 2.)
genome : 28,113,482 - 28,561,765 (448,284)
query : 1 - 1,855 (1,855/1,855)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 7, nucl 5.5, cyto_nucl 5.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000360911 (
ENST00000379632
)
(BRCA1-A complex subunit BRE isoform 3.)
genome : 28,113,482 - 28,561,765 (448,284)
query : 1 - 1,927 (1,927/1,927)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.8333, nucl 11, cyto 8.5,
cyto_pero 6.33333, mito 6, E.R._mito 4.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000319654 (
NM_199191
)
(BRCA1-A complex subunit BRE isoform 2.)
genome : 28,113,557 - 28,561,768 (448,212)
query : 1 - 1,717 (1,717/1,720)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, mito_pero 10, cyto 8, pero 4.5, extr 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000201627 (
NM_004899
)
(BRCA1-A complex subunit BRE isoform 1.)
genome : 28,113,557 - 28,561,768 (448,212)
query : 1 - 1,891 (1,891/1,893)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10.5, cyto 9, cyto_nucl 8.33333,
mito_pero 7.83333, cyto_pero 7.16667, nucl 6.5, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000319655 (
NM_199192
)
(BRCA1-A complex subunit BRE isoform 3.)
genome : 28,113,557 - 28,561,768 (448,212)
query : 1 - 1,789 (1,789/1,791)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 9.83333, mito 9.5, nucl 8.5, cyto 8,
mito_pero 7.33333, cyto_pero 6.83333, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000137403 (
ENST00000344773
)
(BRCA1-A complex subunit BRE isoform 1.)
genome : 28,113,557 - 28,561,765 (448,209)
query : 1 - 1,888 (1,888/1,888)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 10.3333, nucl 10, cyto 8.5, mito 8,
cyto_pero 5.66667, E.R._mito 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000002572
(
AK000097
)
(BRCA1-A complex subunit BRE isoform 1.)
genome : 28,113,596 - 28,561,766 (448,171)
query : 1 - 1,850 (1,850/1,865)
13 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.994;0.996)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10.5, cyto 9, cyto_nucl 8.33333,
mito_pero 7.83333, cyto_pero 7.16667, nucl 6.5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000423883
(
AK291086
)
(BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;)
genome : 28,113,606 - 28,561,471 (447,866)
query : 1 - 1,371 (1,371/1,371)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.991;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, mito_pero 10, cyto 8, pero 4.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000062369
(
AF015767
)
(BRCA1-A complex subunit BRE isoform 2.)
genome : 28,113,617 - 28,561,765 (448,149)
query : 10 - 1,664 (1,655/1,664)
12 exons
identity = 0.999
5'(0.989;1.000;1.000;1.000;0.995;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, mito_pero 10, cyto 8, pero 4.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000360903 (
ENST00000379624
)
(BRCA1-A complex subunit BRE isoform 2.)
genome : 28,113,617 - 28,561,768 (448,152)
query : 1 - 1,657 (1,657/1,657)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, mito_pero 10, cyto 8, pero 4.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000596174 (
ENST00000492702
)
(Similar to BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;)
genome : 28,113,630 - 28,117,935 (4,306)
query : 1 - 616 (616/616)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.3333, cyto 10, mito 8, cyto_pero 7.33333,
mito_nucl 7.33333, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000193395
(
L38616
)
Representative transcript
(BRCA1-A complex subunit BRE isoform 2.)
genome : 28,113,659 - 28,561,765 (448,107)
query : 7 - 1,683 (1,677/1,683)
13 exons
identity = 0.999
5'(0.980;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.996
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, mito_pero 10, cyto 8, pero 4.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AF527952
Gallus
sp. (Chicken) : AJ719374
Rattus
sp. (Rat) : BC061573
Bos
sp. (Cow) : BC150022
Pongo
sp. (Orangutan) : CR857384
Macaca
sp. (Macaque) : ENSMMUT00000020287
Oryzias
sp. (Medaka) : ENSORLT00000022800
Tetraodon
sp. (Tetraodon) : GSTENT00034746001
Tetraodon
sp. (Tetraodon) : GSTENT00034747001
Takifugu
sp. (Fugu) : SINFRUT00000178761
Pan
sp. (Chimpanzee) : XM_001160470
Monodelphis
sp. (Opossum) : XM_001371252
Equus
sp. (Horse) : XM_001502017
Canis
sp. (Dog) : XM_845588
HIX0001933
HIT000600248 (
ENST00000496951
)
(Similar to BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;)
genome : 28,113,654 - 28,153,228 (39,575)
query : 1 - 738 (738/738)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 9.5, cyto_nucl 6.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000314960 (
ENST00000361704
)
(BRCA1-A complex subunit BRE isoform 3.)
genome : 28,113,660 - 28,561,768 (448,109)
query : 1 - 1,686 (1,686/1,686)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 9.83333, mito 9.5, nucl 8.5, cyto 8,
mito_pero 7.33333, cyto_pero 6.83333, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000079392
(
AF420602
)
(BRCA1-A complex subunit BRE isoform 3.)
genome : 28,113,660 - 28,561,583 (447,924)
query : 1 - 1,501 (1,501/1,501)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 9.83333, mito 9.5, nucl 8.5, cyto 8,
mito_pero 7.33333, cyto_pero 6.83333, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000079393
(
AF420603
)
(BRCA1-A complex subunit BRE isoform 3.)
genome : 28,113,660 - 28,561,583 (447,924)
query : 1 - 1,567 (1,567/1,567)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 9.83333, mito 9.5, nucl 8.5, cyto 8,
mito_pero 7.33333, cyto_pero 6.83333, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000079394
(
AF420604
)
(Similar to BRCA1-A complex subunit BRE isoform 3.)
genome : 28,113,660 - 28,561,583 (447,924)
query : 1 - 1,438 (1,438/1,438)
12 exons
identity = 0.995
5'(1.000;0.987;0.939;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 13, cyto 13, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000079395
(
AF420605
)
(BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;)
genome : 28,113,660 - 28,561,583 (447,924)
query : 1 - 1,401 (1,401/1,401)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 9.83333, mito 9.5, nucl 8.5, cyto 8,
mito_pero 7.33333, cyto_pero 6.83333, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000360902 (
ENST00000379623
)
(Similar to BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;)
genome : 28,113,660 - 28,561,583 (447,924)
query : 1 - 1,438 (1,438/1,438)
12 exons
identity = 0.995
5'(1.000;0.987;0.939;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 13, cyto 13, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000030259
(
BC001251
)
(BRCA1-A complex subunit BRE isoform 2.)
genome : 28,117,402 - 28,561,766 (444,365)
query : 1 - 1,560 (1,560/1,577)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, mito_pero 10, cyto 8, pero 4.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000360908 (
ENST00000379629
)
(Similar to BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;)
genome : 28,117,412 - 28,456,182 (338,771)
query : 1 - 865 (865/865)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 9.83333, cyto 9, mito 9, cyto_pero 6.66667,
nucl 5.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000254699
(
AY438031
)
(BRCA1-A complex subunit BRE isoform 2.)
genome : 28,117,424 - 28,561,380 (443,957)
query : 1 - 1,152 (1,152/1,152)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, mito_pero 10, cyto 8, pero 4.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0029951
HIT000095705
(
BC039439
)
Representative transcript
(Hypothetical short protein.)
genome : 28,206,828 - 28,207,896 (1,069)
query : 1 - 1,069 (1,069/1,084)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, mito 4, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029951)
HIX0029951
HIT000098899
(
BC048132
)
(Hypothetical short protein.)
genome : 28,206,828 - 28,207,896 (1,069)
query : 1 - 1,069 (1,069/1,084)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, mito 4, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029951)
HIX0001933
HIT000218500
(
U19178
)
(Similar to BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;)
genome : 28,210,859 - 28,561,766 (350,908)
query : 147 - 1,654 (1,508/1,654)
10 exons
identity = 0.999
5'(1.000;0.995;1.000;1.000;1.000;1.000;1.000;
0.994;1.000;1.000)3'
coverage = 0.912
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 14, nucl 10.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0204306
HIT000659493 (
NR_036230
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,219,234 - 28,219,316 (83)
query : 1 - 83 (83/83)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204306)
HIX0161923
HIT000309900_04 (
ENST00000355813
)
Representative transcript
(Hypothetical protein.)
genome : 28,238,677 - 28,239,349 (673)
query : 1 - 600 (600/600)
2 exons
identity = 0.993
3'(1.000;0.984)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 9, extr 8, mito 7, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161923)
HIX0030101
HIT000067026
(
AF086147
)
Representative transcript
(Hypothetical short protein.)
genome : 28,312,740 - 28,413,558 (100,819)
query : 1 - 493 (493/504)
2 exons
identity = 0.976
5'(0.993;0.847)3'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030101)
HIX0001934
HIT000014029
(
AK057415
)
Representative transcript
(Hypothetical short protein.)
genome : 28,371,422 - 28,429,828 (58,407)
query : 4 - 2,261 (2,258/2,262)
3 exons
identity = 0.998
3'(0.999;1.000;0.994)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 5.5, cyto_nucl 4.5, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001934)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : XM_001100823
HIX0001933
HIT000273327
(
CR594132
)
(Similar to BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;)
genome : 28,460,069 - 28,561,748 (101,680)
query : 1 - 840 (840/840)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0001933
HIT000286183
(
CR606988
)
(Similar to BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;)
genome : 28,521,196 - 28,561,651 (40,456)
query : 1 - 498 (498/498)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010358 : Brain/reproductive organ-expressed protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 14, nucl 6.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0030353
HIT000097030
(
BC041993
)
Representative transcript
(Pseudogene candidate (60S ribosomal protein; Fragment;).)
genome : 28,530,559 - 28,533,326 (2,768)
query : 1 - 2,107 (2,107/2,122)
3 exons
identity = 0.995
3'(0.995;1.000;0.995)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11.8333, extr 10,
cyto_pero 7.83333, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030353)
HIX0030353
HIT000660255 (
NR_038319
)
(Similar to 60S ribosomal protein; Fragment;)
genome : 28,530,559 - 28,533,326 (2,768)
query : 1 - 2,109 (2,109/2,124)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11.8333, extr 10,
cyto_pero 7.83333, nucl 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030353)
HIX0030353
HIT000516897 (
ENST00000418963
)
(Similar to 60S ribosomal protein; Fragment;)
genome : 28,530,558 - 28,533,326 (2,769)
query : 1 - 2,110 (2,110/2,110)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11.8333, extr 10,
cyto_pero 7.83333, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030353)
HIX0162462
HIT000521417 (
ENST00000423483
)
Representative transcript
(Ribosomal protein L25/L23 family protein.)
genome : 28,531,028 - 28,531,437 (410)
query : 1 - 410 (410/410)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR012677 : Nucleotide-binding, alpha-beta plait
IPR012678 : Ribosomal protein L23/L15e
IPR013025 : Ribosomal protein L25/L23
GO :
0000166 : Molecular Function : nucleotide binding
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, mito 8, nucl 6, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162462)
HIX0001933
HIT000023175
(
AK098345
)
(Similar to BRCA1-A complex subunit BRE isoform 1.)
genome : 28,548,879 - 28,561,765 (12,887)
query : 1 - 1,881 (1,881/1,881)
2 exons
identity = 0.995
5'(0.994;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.8333, cyto 12, nucl 10.5, extr 8,
cyto_pero 7.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
HIX0019132
HIT000021861
(
AK097006
)
Representative transcript
(Hypothetical protein.)
genome : 28,554,534 - 28,556,803 (2,270)
query : 1 - 2,270 (2,270/2,270)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, extr 9, cyto 7, cyto_nucl 5.83333,
cyto_pero 4.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019132)
HIX0001935
HIT000012532
(
AK055918
)
Representative transcript
(Hypothetical protein.)
genome : 28,607,276 - 28,617,539 (10,264)
query : 1 - 2,850 (2,850/2,850)
2 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 10.5, cyto_nucl 7.5, nucl 3.5, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001935)
HIX0001935
HIT000525863 (
ENST00000427929
)
(Hypothetical protein.)
genome : 28,607,276 - 28,617,539 (10,264)
query : 1 - 2,850 (2,850/2,850)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 10.5, cyto_nucl 7.5, nucl 3.5, golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001935)
HIX0001935
HIT000543812 (
ENST00000445878
)
(Hypothetical protein.)
genome : 28,607,276 - 28,617,539 (10,264)
query : 1 - 3,001 (3,001/3,001)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 10.5, cyto_nucl 7.5, nucl 3.5, golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001935)
HIX0001936
HIT000565652 (
ENST00000460736
)
(Similar to Uncharacterized protein;)
genome : 28,615,315 - 28,631,669 (16,355)
query : 1 - 393 (393/393)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000837 : Fos transforming protein
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 16, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000056469
(
BX647822
)
(Similar to Fos-related antigen 2; FRA-2;)
genome : 28,615,669 - 28,639,445 (23,777)
query : 2 - 5,094 (5,093/5,094)
4 exons
identity = 0.999
5'(1.000;0.996;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000837 : Fos transforming protein
IPR004827 : Basic-leucine zipper (bZIP) transcription factor
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000360898 (
ENST00000379619
)
(Similar to Fos-related antigen 2; FRA-2;)
genome : 28,615,669 - 28,640,179 (24,511)
query : 1 - 5,829 (5,829/5,829)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000837 : Fos transforming protein
IPR004827 : Basic-leucine zipper (bZIP) transcription factor
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000012193
(
AK055579
)
(Fos-related antigen 2; FRA-2;)
genome : 28,615,725 - 28,635,837 (20,113)
query : 1 - 2,366 (2,366/2,366)
4 exons
identity = 0.998
5'(0.998;0.996;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000837 : Fos transforming protein
IPR004827 : Basic-leucine zipper (bZIP) transcription factor
IPR011616 : bZIP transcription factor, bZIP-1
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0043565 : Molecular Function : sequence-specific DNA binding
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000201958 (
NM_005253
)
(Fos-related antigen 2.)
genome : 28,615,779 - 28,637,515 (21,737)
query : 1 - 3,990 (3,990/4,015)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000837 : Fos transforming protein
IPR004827 : Basic-leucine zipper (bZIP) transcription factor
IPR011616 : bZIP transcription factor, bZIP-1
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0043565 : Molecular Function : sequence-specific DNA binding
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000109415 (
ENST00000264716
)
(Fos-related antigen 2.)
genome : 28,615,779 - 28,637,514 (21,736)
query : 1 - 3,989 (3,989/3,989)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000039640
(
BC022791
)
Representative transcript
(Fos-related antigen 2.)
genome : 28,616,355 - 28,635,838 (19,484)
query : 1 - 1,737 (1,737/1,780)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000837 : Fos transforming protein
IPR004827 : Basic-leucine zipper (bZIP) transcription factor
IPR011616 : bZIP transcription factor, bZIP-1
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0043565 : Molecular Function : sequence-specific DNA binding
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC065131
Danio
sp. (Zebrafish) : BC133086
Equus
sp. (Horse) : ENSECAT00000018723
Gallus
sp. (Chicken) : ENSGALT00000016303
Monodelphis
sp. (Opossum) : ENSMODT00000019785
Oryzias
sp. (Medaka) : ENSORLT00000022799
Pongo
sp. (Orangutan) : ENSPPYT00000014563
Tetraodon
sp. (Tetraodon) : GSTENT00034749001
Takifugu
sp. (Fugu) : SINFRUT00000152685
Macaca
sp. (Macaque) : XM_001101118
Pan
sp. (Chimpanzee) : XM_001160880
Canis
sp. (Dog) : XM_857152
Bos
sp. (Cow) : XM_864138
HIX0001936
HIT000434281
(
AK315415
)
(Fos-related antigen 2; FRA-2;)
genome : 28,616,475 - 28,635,315 (18,841)
query : 1 - 1,094 (1,094/1,094)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000837 : Fos transforming protein
IPR004827 : Basic-leucine zipper (bZIP) transcription factor
IPR011616 : bZIP transcription factor, bZIP-1
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0043565 : Molecular Function : sequence-specific DNA binding
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000321575
(
X16706
)
(Fos-related antigen 2.)
genome : 28,616,585 - 28,635,338 (18,754)
query : 1 - 1,007 (1,007/1,007)
4 exons
identity = 0.998
5'(1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR000837 : Fos transforming protein
IPR004827 : Basic-leucine zipper (bZIP) transcription factor
IPR011616 : bZIP transcription factor, bZIP-1
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0043565 : Molecular Function : sequence-specific DNA binding
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000269130
(
CR542262
)
(Fos-related antigen 2.)
genome : 28,616,588 - 28,635,315 (18,728)
query : 1 - 981 (981/981)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000837 : Fos transforming protein
IPR004827 : Basic-leucine zipper (bZIP) transcription factor
IPR011616 : bZIP transcription factor, bZIP-1
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0043565 : Molecular Function : sequence-specific DNA binding
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000534581 (
ENST00000436647
)
(Similar to Fos-related antigen 2; FRA-2;)
genome : 28,618,378 - 28,635,059 (16,682)
query : 1 - 889 (889/889)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000837 : Fos transforming protein
IPR004827 : Basic-leucine zipper (bZIP) transcription factor
IPR011616 : bZIP transcription factor, bZIP-1
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0043565 : Molecular Function : sequence-specific DNA binding
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000497246
(
AK302622
)
(Similar to Fos-related antigen 2; FRA-2;)
genome : 28,618,579 - 28,635,354 (16,776)
query : 1 - 983 (983/983)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000837 : Fos transforming protein
IPR004827 : Basic-leucine zipper (bZIP) transcription factor
IPR011616 : bZIP transcription factor, bZIP-1
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0043565 : Molecular Function : sequence-specific DNA binding
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000644798 (
ENST00000545753
)
(Similar to Fos-related antigen 2; FRA-2;)
genome : 28,618,579 - 28,635,354 (16,776)
query : 1 - 983 (983/983)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000837 : Fos transforming protein
IPR004827 : Basic-leucine zipper (bZIP) transcription factor
IPR011616 : bZIP transcription factor, bZIP-1
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-dependent
0043565 : Molecular Function : sequence-specific DNA binding
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000010233
(
AK026959
)
(Hypothetical protein.)
genome : 28,635,791 - 28,637,515 (1,725)
query : 1 - 1,725 (1,725/1,820)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16.5, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000266108
(
BC085197
)
(Conserved hypothetical protein.)
genome : 28,636,016 - 28,637,515 (1,500)
query : 1 - 1,500 (1,500/1,519)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 15.5, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0001936
HIT000034062
(
BC008899
)
(Conserved hypothetical protein.)
genome : 28,636,019 - 28,637,515 (1,497)
query : 1 - 1,497 (1,497/1,589)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16.5, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001936)
HIX0162854
HIT000537634 (
ENST00000439700
)
Representative transcript
(Hypothetical short protein.)
genome : 28,671,034 - 28,673,051 (2,018)
query : 1 - 849 (849/849)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 6, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162854)
HIX0024210
HIT000514647 (
ENST00000416713
)
(Similar to Phospholipase B1, membrane-associated; Phospholipase B; hPLB; Phospholipase B/lipase; PLB/LIP; Includes: Phospholipase A2; EC=3.1.1.4; Includes: Lysophospholipase; EC=3.1.1.5; Precursor;)
genome : 28,680,012 - 28,762,032 (82,021)
query : 1 - 716 (716/716)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 13, cyto 13, extr 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024210)
HIX0204130
HIT000573554 (
ENST00000469016
)
Representative transcript
(Conserved hypothetical protein.)
genome : 28,683,123 - 28,683,228 (106)
query : 1 - 106 (106/106)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 9.5, extr 9, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204130)
HIX0024210
HIT000214162 (
NM_153021
)
(Phospholipase B1, membrane-associated isoform 1 precursor.)
genome : 28,718,938 - 28,866,654 (147,717)
query : 1 - 5,148 (5,148/5,148)
58 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.1.4
,
EC 3.1.1.5
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
00565 : Ether lipid metabolism (23)
00590 : Arachidonic acid metabolism (26)
00591 : Linoleic acid metabolism (11)
00592 : alpha-Linolenic acid metabolism (10)
01100 : Metabolic pathways (1346)
InterPro :
IPR001087 : Lipase, GDSL
IPR008265 : Lipase, GDSL, active site
IPR013830 : Esterase, SGNH hydrolase-type
IPR013831 : Esterase, SGNH hydrolase-type, subgroup
GO :
0006629 : Biological Process : lipid metabolic process
0016298 : Molecular Function : lipase activity
0016787 : Molecular Function : hydrolase activity
0016788 : Molecular Function : hydrolase activity, acting on ester bonds
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19.5, extr_plas 11.5, pero 6, lyso 3,
mito_pero 3, cyto_pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024210)
HIX0024210
HIT000654631 (
NM_001170585
)
(Phospholipase B1, membrane-associated isoform 2 precursor.)
genome : 28,718,938 - 28,866,654 (147,717)
query : 1 - 5,115 (5,115/5,115)
57 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.1.4
,
EC 3.1.1.5
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
00565 : Ether lipid metabolism (23)
00590 : Arachidonic acid metabolism (26)
00591 : Linoleic acid metabolism (11)
00592 : alpha-Linolenic acid metabolism (10)
01100 : Metabolic pathways (1346)
InterPro :
IPR001087 : Lipase, GDSL
IPR008265 : Lipase, GDSL, active site
IPR013830 : Esterase, SGNH hydrolase-type
IPR013831 : Esterase, SGNH hydrolase-type, subgroup
GO :
0006629 : Biological Process : lipid metabolic process
0016298 : Molecular Function : lipase activity
0016787 : Molecular Function : hydrolase activity
0016788 : Molecular Function : hydrolase activity, acting on ester bonds
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20.5, extr_plas 12, pero 6, plas 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024210)
HIX0024210
HIT000503327
(
BC150633
)
Representative transcript
(Phospholipase B1, membrane-associated isoform 2 precursor.)
genome : 28,718,938 - 28,866,430 (147,493)
query : 1 - 4,924 (4,924/4,924)
58 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001087 : Lipase, GDSL
IPR008265 : Lipase, GDSL, active site
IPR013830 : Esterase, SGNH hydrolase-type
IPR013831 : Esterase, SGNH hydrolase-type, subgroup
GO :
0006629 : Biological Process : lipid metabolic process
0016298 : Molecular Function : lipase activity
0016787 : Molecular Function : hydrolase activity
0016788 : Molecular Function : hydrolase activity, acting on ester bonds
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19.5, extr_plas 11.5, pero 6, lyso 3,
mito_pero 3, cyto_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024210)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK030142
Rattus
sp. (Rat) : D63648
Monodelphis
sp. (Opossum) : DQ875604
Bos
sp. (Cow) : ENSBTAT00000024845
Canis
sp. (Dog) : ENSCAFT00000008431
Equus
sp. (Horse) : ENSECAT00000020562
Gallus
sp. (Chicken) : ENSGALT00000016296
Macaca
sp. (Macaque) : ENSMMUT00000011686
Pongo
sp. (Orangutan) : ENSPPYT00000014562
Pan
sp. (Chimpanzee) : XM_515372
Danio
sp. (Zebrafish) : XM_684046
HIX0024210
HIT000125885 (
ENST00000329020
)
(Similar to Phospholipase B1, membrane-associated; Phospholipase B; hPLB; Phospholipase B/lipase; PLB/LIP; Includes: Phospholipase A2; EC=3.1.1.4; Includes: Lysophospholipase; EC=3.1.1.5; Precursor;)
genome : 28,718,938 - 28,816,920 (97,983)
query : 1 - 2,447 (2,447/2,447)
34 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001087 : Lipase, GDSL
IPR008265 : Lipase, GDSL, active site
IPR013830 : Esterase, SGNH hydrolase-type
IPR013831 : Esterase, SGNH hydrolase-type, subgroup
GO :
0006629 : Biological Process : lipid metabolic process
0016298 : Molecular Function : lipase activity
0016787 : Molecular Function : hydrolase activity
0016788 : Molecular Function : hydrolase activity, acting on ester bonds
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 5, lyso 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024210)
HIX0024210
HIT000125170 (
ENST00000327757
)
(Phospholipase B1, membrane-associated isoform 1 precursor.)
genome : 28,718,982 - 28,866,613 (147,632)
query : 1 - 5,063 (5,063/5,063)
58 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024210)
HIX0024210
HIT000520359 (
ENST00000422425
)
(Phospholipase B1, membrane-associated isoform 2 precursor.)
genome : 28,718,982 - 28,866,613 (147,632)
query : 1 - 5,030 (5,030/5,030)
57 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001087 : Lipase, GDSL
IPR008265 : Lipase, GDSL, active site
IPR013830 : Esterase, SGNH hydrolase-type
IPR013831 : Esterase, SGNH hydrolase-type, subgroup
GO :
0006629 : Biological Process : lipid metabolic process
0016298 : Molecular Function : lipase activity
0016787 : Molecular Function : hydrolase activity
0016788 : Molecular Function : hydrolase activity, acting on ester bonds
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20.5, extr_plas 12, pero 6, plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024210)
HIX0024210
HIT000436096
(
BC153864
)
(Similar to Phospholipase B1, membrane-associated; Phospholipase B; hPLB; Phospholipase B/lipase; PLB/LIP; Includes: Phospholipase A2; EC=3.1.1.4; Includes: Lysophospholipase; EC=3.1.1.5; Precursor;)
genome : 28,718,986 - 28,866,018 (147,033)
query : 1 - 4,431 (4,431/4,431)
57 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001087 : Lipase, GDSL
IPR008265 : Lipase, GDSL, active site
IPR013830 : Esterase, SGNH hydrolase-type
IPR013831 : Esterase, SGNH hydrolase-type, subgroup
GO :
0006629 : Biological Process : lipid metabolic process
0016298 : Molecular Function : lipase activity
0016787 : Molecular Function : hydrolase activity
0016788 : Molecular Function : hydrolase activity, acting on ester bonds
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, extr_plas 11, pero 8, plas 4, mito_pero 4,
cyto_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024210)
HIX0024210
HIT000505003 (
ENST00000404858
)
(Similar to Phospholipase B1, membrane-associated; Phospholipase B; hPLB; Phospholipase B/lipase; PLB/LIP; Includes: Phospholipase A2; EC=3.1.1.4; Includes: Lysophospholipase; EC=3.1.1.5; Precursor;)
genome : 28,718,986 - 28,866,018 (147,033)
query : 1 - 4,431 (4,431/4,431)
57 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001087 : Lipase, GDSL
IPR008265 : Lipase, GDSL, active site
IPR013830 : Esterase, SGNH hydrolase-type
IPR013831 : Esterase, SGNH hydrolase-type, subgroup
GO :
0006629 : Biological Process : lipid metabolic process
0016298 : Molecular Function : lipase activity
0016787 : Molecular Function : hydrolase activity
0016788 : Molecular Function : hydrolase activity, acting on ester bonds
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, extr_plas 11, pero 8, plas 4, mito_pero 4,
cyto_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024210)
HIX0001933
pHIT000004011 ( pHIT000004011 )
(Similar to 39S ribosomal protein L33, mitochondrial; L33mt; MRP-L33;)
genome : 27,994,426 - 28,002,349 (7,924)
query : 1 - 519 (519/519)
3 exons
InterPro :
IPR001705 : Ribosomal protein L33
IPR011332 : Ribosomal protein, zinc-binding domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, nucl 8.5, cyto_nucl 8, cyto 6.5,
E.R._mito 6.5
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001933)
CAGE tag :
H04BA94H1102,H05BA07I1801,H05BF21B1707
H06BA78F0504,H08BA08I0511
AC074091.6
27957288-28001099 F -
NCBI
AC110084.5
28001100-28083424 F +
NCBI
AC021171.6
28083425-28244033 F +
NCBI
AC096552.3
28244034-28361485 F +
NCBI
AC093690.5
28361486-28560952 F +
NCBI
AC104695.2
28560953-28718617 F +
NCBI
AC093164.6
28718618-28757287 F +
NCBI