bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0199963
HIT000211502 (
NM_052877
)
(Mediator of RNA polymerase II transcription subunit 8 isoform 3.)
genome : 43,849,588 - 43,855,483 (5,896)
query : 1 - 1,487 (1,487/1,502)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR019364 : Mediator complex, subunit Med8, fungi/metazoa
GO :
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016455 : Molecular Function : RNA polymerase II transcription mediator activity
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 15
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199963)
HIX0199963
HIT000034991
(
BC010543
)
(Similar to Mediator of RNA polymerase II transcription subunit 8; Activator-recruited cofactor 32 kDa component; ARC32; Mediator complex subunit 8;)
genome : 43,849,588 - 43,854,094 (4,507)
query : 1 - 1,428 (1,428/1,443)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019364 : Mediator complex, subunit Med8, fungi/metazoa
GO :
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016455 : Molecular Function : RNA polymerase II transcription mediator activity
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199963)
HIX0199963
HIT000113320 (
ENST00000290663
)
(Mediator of RNA polymerase II transcription subunit 8 isoform 3.)
genome : 43,849,589 - 43,855,483 (5,895)
query : 1 - 1,486 (1,486/1,486)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199963)
HIX0199963
HIT000301574
(
CR622379
)
(Similar to Mediator of RNA polymerase II transcription subunit 8; Activator-recruited cofactor 32 kDa component; ARC32; Mediator complex subunit 8;)
genome : 43,849,640 - 43,854,104 (4,465)
query : 1 - 1,861 (1,861/1,861)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019364 : Mediator complex, subunit Med8, fungi/metazoa
GO :
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016455 : Molecular Function : RNA polymerase II transcription mediator activity
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199963)
HIX0199963
HIT000319865 (
NM_201542
)
(Mediator of RNA polymerase II transcription subunit 8 isoform 1.)
genome : 43,850,397 - 43,855,483 (5,087)
query : 1 - 1,171 (1,171/1,193)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019364 : Mediator complex, subunit Med8, fungi/metazoa
GO :
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016455 : Molecular Function : RNA polymerase II transcription mediator activity
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16.5, nucl 10.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199963)
HIX0199963
HIT000034742
(
BC010019
)
(Mediator of RNA polymerase II transcription subunit 8; Activator-recruited cofactor 32 kDa component; ARC32; Mediator complex subunit 8;)
genome : 43,850,397 - 43,855,455 (5,059)
query : 1 - 1,186 (1,186/1,208)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019364 : Mediator complex, subunit Med8, fungi/metazoa
GO :
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016455 : Molecular Function : RNA polymerase II transcription mediator activity
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, extr 9, cyto 5, E.R._mito 5, cyto_nucl 4.5,
extr_plas 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199963)
HIX0199963
HIT000353735 (
ENST00000372455
)
(Mediator of RNA polymerase II transcription subunit 8; Activator-recruited cofactor 32 kDa component; ARC32; Mediator complex subunit 8;)
genome : 43,850,397 - 43,855,455 (5,059)
query : 1 - 1,186 (1,186/1,186)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019364 : Mediator complex, subunit Med8, fungi/metazoa
GO :
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016455 : Molecular Function : RNA polymerase II transcription mediator activity
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, extr 9, cyto 5, E.R._mito 5, cyto_nucl 4.5,
extr_plas 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199963)
HIX0199963
HIT000353737 (
ENST00000372457
)
(Mediator of RNA polymerase II transcription subunit 8 isoform 1.)
genome : 43,850,400 - 43,855,483 (5,084)
query : 1 - 1,168 (1,168/1,168)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199963)
HIX0199963
HIT000081196
(
AF521562
)
Representative transcript
(Mediator of RNA polymerase II transcription subunit 8 isoform 1.)
genome : 43,850,713 - 43,854,104 (3,392)
query : 2 - 807 (806/807)
6 exons
identity = 0.999
3'(1.000;0.996;1.000;1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16.5, nucl 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199963)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB097545
Mus
sp. (Mouse) : AK005422
Gallus
sp. (Chicken) : BX934369
Danio
sp. (Zebrafish) : ENSDART00000100316
Equus
sp. (Horse) : ENSECAT00000010905
Monodelphis
sp. (Opossum) : ENSMODT00000014410
Oryzias
sp. (Medaka) : ENSORLT00000017798
Pongo
sp. (Orangutan) : ENSPPYT00000001732
Tetraodon
sp. (Tetraodon) : GSTENT00013745001
Takifugu
sp. (Fugu) : SINFRUT00000142153
Rattus
sp. (Rat) : XM_001072348
Pan
sp. (Chimpanzee) : XM_001173530
HIX0160938
HIT000534647 (
ENST00000436713
)
Representative transcript
(Conserved hypothetical protein.)
genome : 43,850,784 - 43,854,826 (4,043)
query : 1 - 731 (731/731)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 9, cyto 2.5, cyto_nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160938)
HIX0199963
HIT000565718 (
ENST00000460803
)
(Similar to Uncharacterized protein; Fragment;)
genome : 43,851,344 - 43,852,602 (1,259)
query : 1 - 710 (710/710)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019364 : Mediator complex, subunit Med8, fungi/metazoa
GO :
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016455 : Molecular Function : RNA polymerase II transcription mediator activity
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15, cyto 10.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199963)
HIX0199963
HIT000577887 (
ENST00000473560
)
(Similar to Mediator of RNA polymerase II transcription subunit 8; Activator-recruited cofactor 32 kDa component; ARC32; Mediator complex subunit 8;)
genome : 43,851,649 - 43,853,318 (1,670)
query : 1 - 979 (979/979)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019364 : Mediator complex, subunit Med8, fungi/metazoa
GO :
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016455 : Molecular Function : RNA polymerase II transcription mediator activity
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 15, mito 5, E.R._mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199963)
HIX0022996
HIT000089335
(
BC017576
)
(Similar to Protein SZT2; Seizure threshold 2 protein homolog;)
genome : 43,855,553 - 43,872,565 (17,013)
query : 2 - 1,192 (1,191/1,217)
5 exons
identity = 0.998
5'(0.982)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, cyto 14, nucl 12, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022996)
HIX0022996
HIT000118803 (
ENST00000310739
)
(Similar to Protein SZT2; Seizure threshold 2 protein homolog;)
genome : 43,855,553 - 43,872,564 (17,012)
query : 1 - 1,196 (1,196/1,196)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, cyto 14, nucl 12, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022996)
HIX0022996
HIT000353730 (
ENST00000372450
)
(Similar to Protein SZT2; Seizure threshold 2 protein homolog;)
genome : 43,855,553 - 43,872,564 (17,012)
query : 1 - 1,190 (1,190/1,190)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, cyto 14, nucl 12, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022996)
HIX0022996
HIT000317250 (
NM_015284
)
(Protein SZT2.)
genome : 43,855,556 - 43,919,918 (64,363)
query : 1 - 13,979 (13,979/13,996)
71 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
EC number :
EC 5.3.1.22
KEGG pathway :
00630 : Glyoxylate and dicarboxylate metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 10, nucl 9.5, cyto 9.5, pero 5, plas 3.5,
extr_plas 3, mito_pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022996)
HIX0022996
HIT000343624 (
ENST00000357658
)
(Similar to Protein SZT2; Seizure threshold 2 protein homolog;)
genome : 43,855,576 - 43,876,224 (20,649)
query : 1 - 1,623 (1,623/1,623)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 10, nucl 9, cysk 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022996)
HIX0022996
HIT000099321
(
BC051343
)
(Similar to Protein SZT2; Seizure threshold 2 protein homolog;)
genome : 43,855,622 - 43,876,226 (20,605)
query : 1 - 1,579 (1,579/1,601)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 10, nucl 9, cysk 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022996)
HIX0022996
HIT000016688
(
AK091821
)
(Similar to Protein SZT2; Seizure threshold 2 protein homolog;)
genome : 43,855,635 - 43,878,462 (22,828)
query : 1 - 2,133 (2,133/2,133)
6 exons
identity = 0.990
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 10, nucl 9, cysk 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022996)
HIX0022996
HIT000505595 (
ENST00000406439
)
(Similar to Protein SZT2; Seizure threshold 2 protein homolog;)
genome : 43,855,635 - 43,878,462 (22,828)
query : 1 - 2,133 (2,133/2,133)
6 exons
identity = 0.998
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 10, nucl 9, cysk 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022996)
AL139289.6
43844535-43860534 F +
NCBI
Charlie16a
AluJb
AluSx1
L2c
AluJr
MIR3
MIRb
MIRb
MIRb
MIR
AluSp
MIR
MER33
AluY
MER33
L3
AluY
L3
L2b
MIR
MIRb
MER5A1
AluSx4
MER5A
AluSp