bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0021590
HIT000037826
(
BC017079
)
genome : 245,912,649 - 246,490,610 (577,962)
query : 1 - 1,080 (1,080/1,110)
8 exons
identity = 0.995
3'()5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0021590
HIT000041201
(
BC031010
)
genome : 245,912,651 - 246,670,559 (757,909)
query : 1 - 1,541 (1,541/1,568)
12 exons
identity = 0.995
3'()5'
coverage = 0.999
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0021590
HIT000241990
(
AB057595
)
genome : 245,912,644 - 246,670,614 (757,971)
query : 1 - 1,603 (1,603/1,622)
12 exons
identity = 0.997
3'()5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0021590
HIT000008007
(
AK024733
)
genome : 245,912,644 - 246,580,711 (668,068)
query : 1 - 1,458 (1,458/1,477)
12 exons
identity = 0.995
3'()5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0021590
HIT000654443 (
NM_001167740
)
genome : 245,912,642 - 246,670,644 (758,003)
query : 1 - 1,635 (1,635/1,641)
12 exons
identity = 0.998
3'()5'
coverage = 0.996
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0021590
HIT000208827 (
NM_022743
)
genome : 245,912,642 - 246,518,410 (605,769)
query : 103 - 1,463 (1,361/1,469)
11 exons
identity = 0.993
3'()5'
coverage = 0.926
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0021590
HIT000640787 (
ENST00000541742
)
genome : 245,912,642 - 246,518,410 (605,769)
query : 103 - 1,463 (1,361/1,463)
11 exons
identity = 0.993
3'()5'
coverage = 0.930
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0021590
HIT000593682 (
ENST00000490107
)
genome : 245,912,644 - 246,670,559 (757,916)
query : 1 - 1,548 (1,548/1,548)
12 exons
identity = 0.997
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0021590
HIT000422402
(
AK289605
)
genome : 245,912,766 - 246,670,620 (757,855)
query : 1 - 1,487 (1,487/1,487)
12 exons
identity = 0.996
3'()5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0021590
HIT000395895 (
ENST00000388985
)
genome : 245,912,865 - 246,518,383 (605,519)
query : 1 - 1,110 (1,110/1,110)
11 exons
identity = 0.996
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0021590
HIT000595973 (
ENST00000492487
)
genome : 246,021,800 - 246,469,311 (447,512)
query : 1 - 634 (634/634)
6 exons
identity = 1.000
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0021590
HIT000475335 (
ENST00000391836
)
genome : 246,021,864 - 246,357,029 (335,166)
query : 1 - 732 (732/732)
7 exons
identity = 1.000
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0021590
HIT000569148 (
ENST00000464398
)
genome : 246,027,111 - 246,259,725 (232,615)
query : 1 - 540 (540/540)
5 exons
identity = 1.000
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0021590
HIT000551610 (
ENST00000453676
)
genome : 246,093,200 - 246,518,637 (425,438)
query : 1 - 562 (562/562)
6 exons
identity = 1.000
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021590)
HIX0160641
HIT000524320 (
ENST00000426386
)
Representative transcript
(Hypothetical protein.)
genome : 246,196,853 - 246,198,905 (2,053)
query : 1 - 703 (703/703)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, mito 7, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160641)
HIX0001759
HIT000014632
(
AK058026
)
Representative transcript
(Hypothetical short protein.)
genome : 246,200,040 - 246,201,929 (1,890)
query : 1 - 1,890 (1,890/1,890)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 7, mito 7, cyto_mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001759)
AC118555.2
246192984-246208983 F -
NCBI
AluSx
L1MA5
AT_rich
AluSc8
MIRc
L1MD1
AluSx
L1MD1
AluY
L1MC4a
LTR33A
L1M
MER58A
Tigger3a
MIRb
L2c
L1PA5