bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0001491
HIT000199602 (
NM_002725
)
(Prolargin precursor.)
genome : 203,444,883 - 203,460,478 (15,596)
query : 1 - 5,818 (5,818/5,833)
3 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, mito 8, E.R. 5, pero 5, lyso 2, golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
HIX0001491
HIT000319806 (
NM_201348
)
(Prolargin precursor.)
genome : 203,444,883 - 203,460,478 (15,596)
query : 1 - 5,808 (5,808/5,823)
3 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, mito 8, E.R. 5, pero 5, lyso 2, golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
HIX0001491
HIT000135740 (
ENST00000343110
)
(Prolargin precursor.)
genome : 203,444,883 - 203,460,475 (15,593)
query : 1 - 5,815 (5,815/5,815)
3 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 5, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
HIX0001491
HIT000218950
(
U29089
)
Representative transcript
(Prolargin precursor.)
genome : 203,444,956 - 203,456,289 (11,334)
query : 2 - 1,557 (1,556/1,560)
3 exons
identity = 0.999
5'(1.000;0.996)3'
coverage = 0.997
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, mito 8, E.R. 5, pero 5, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB174642
Rattus
sp. (Rat) : AF163569
Mus
sp. (Mouse) : AK037150
Bos
sp. (Cow) : BC149945
Danio
sp. (Zebrafish) : CU468791
Equus
sp. (Horse) : ENSECAT00000019131
Monodelphis
sp. (Opossum) : ENSMODT00000001341
Oryzias
sp. (Medaka) : ENSORLT00000019684
Pongo
sp. (Orangutan) : ENSPPYT00000000383
Pan
sp. (Chimpanzee) : ENSPTRT00000042963
Tetraodon
sp. (Tetraodon) : GSTENT00020801001
Takifugu
sp. (Fugu) : SINFRUT00000167889
Gallus
sp. (Chicken) : XM_418054
Canis
sp. (Dog) : XM_545678
HIX0001491
HIT000041569
(
BC032498
)
(Prolargin precursor.)
genome : 203,444,965 - 203,456,291 (11,327)
query : 1 - 1,549 (1,549/1,640)
3 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, mito 8, E.R. 5, pero 5, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
HIX0001491
HIT000269138
(
CR542270
)
(Prolargin precursor.)
genome : 203,452,313 - 203,456,009 (3,697)
query : 1 - 1,149 (1,149/1,149)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, mito 8, E.R. 5, pero 5, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
HIX0001491
HIT000268658
(
CR541787
)
(Prolargin; Proline-arginine-rich end leucine-rich repeat protein; Precursor;)
genome : 203,452,313 - 203,456,006 (3,694)
query : 1 - 1,146 (1,146/1,146)
2 exons
identity = 0.999
5'(0.999;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 9, extr 7, E.R._mito 7, mito_pero 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
HIX0001490
HIT000023075
(
AK098245
)
Representative transcript
(Hypothetical protein.)
genome : 203,458,364 - 203,460,473 (2,110)
query : 1 - 2,110 (2,110/2,110)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18.5, mito 10, extr_plas 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001490)
HIX0028570
HIT000204739 (
NM_014359
)
(Opticin precursor.)
genome : 203,463,271 - 203,478,077 (14,807)
query : 1 - 1,444 (1,444/1,444)
8 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
HIX0028570
HIT000348502 (
ENST00000367222
)
(Opticin precursor.)
genome : 203,463,271 - 203,478,077 (14,807)
query : 1 - 1,444 (1,444/1,444)
8 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
HIX0028570
HIT000084203
(
AY077681
)
Representative transcript
(Opticin precursor.)
genome : 203,463,271 - 203,477,992 (14,722)
query : 1 - 1,359 (1,359/1,359)
8 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK153750
Canis
sp. (Dog) : AY048585
Gallus
sp. (Chicken) : AY156089
Bos
sp. (Cow) : AY249537
Danio
sp. (Zebrafish) : BC078270
Equus
sp. (Horse) : ENSECAT00000019332
Pongo
sp. (Orangutan) : ENSPPYT00000000382
Tetraodon
sp. (Tetraodon) : GSTENT00020800001
Takifugu
sp. (Fugu) : SINFRUT00000160741
Rattus
sp. (Rat) : XM_001061460
Macaca
sp. (Macaque) : XM_001102193
Pan
sp. (Chimpanzee) : XM_001155649
Monodelphis
sp. (Opossum) : XM_001370115
HIX0028570
HIT000244782
(
AJ133790
)
(Opticin precursor.)
genome : 203,463,271 - 203,477,992 (14,722)
query : 1 - 1,359 (1,359/1,359)
8 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
HIX0028570
HIT000072194
(
AF161702
)
(Opticin precursor.)
genome : 203,463,294 - 203,477,993 (14,700)
query : 1 - 1,337 (1,337/1,369)
8 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
HIX0028570
HIT000546845 (
ENST00000448911
)
(Similar to Opticin; Oculoglycan; Precursor;)
genome : 203,465,098 - 203,468,837 (3,740)
query : 1 - 560 (560/560)
4 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001611 : Leucine-rich repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
HIX0028570
HIT000265449
(
BC074942
)
(Opticin precursor.)
genome : 203,465,100 - 203,472,875 (7,776)
query : 1 - 1,060 (1,060/1,069)
6 exons
identity = 0.999
5'(1.000;1.000)3'
coverage = 0.992
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
HIX0028570
HIT000265450
(
BC074943
)
(Opticin precursor.)
genome : 203,465,100 - 203,472,875 (7,776)
query : 1 - 1,060 (1,060/1,069)
6 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.992
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
AL391817.18
203451418-203467417 F +
NCBI
AluSq
AluY
MIR
X7A_LINE
MIRc
MIR3
L2c
MIRc
MIR3
AluSx
MIR3
AluSx
AluJr
L2b
L2c
LTR7
L2c
MIR3
MER2B
AluJb
L2c
AluSq
MIR3
MLT1K
L3