Clickable map CGI

HIX0000179
HIT000033484 ( BC007840 )
  Representative transcript
  (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial precursor.)
  genome : 17,345,265 - 17,380,665 (35,401)
  query : 1 - 1,105 (1,105/1,130)
  8 exons
  identity = 0.999
  3'(0.996)5'
  coverage = 1.000
  EC number :
    EC 1.3.99.1
  KEGG pathway :
    00020 : Citrate cycle (TCA cycle) (22)
    00190 : Oxidative phosphorylation (12)
    00623 : Toluene degradation (23)
    00650 : Butanoate metabolism (47)
    00720 : Carbon fixation pathways in prokaryotes (41)
    01100 : Metabolic pathways (1346)
    01110 : Biosynthesis of secondary metabolites (562)
    01120 : Microbial metabolism in diverse environments (468)
  InterPro :
    IPR001041 : Ferredoxin
    IPR004489 : Succinate dehydrogenase/fumarate reductase iron-sulphur protein
    IPR006058 : 2Fe-2S ferredoxin, iron-sulphur binding site
    IPR009051 : Alpha-helical ferredoxin
    IPR012285 : Fumarate reductase, C-terminal
    IPR012675 : Beta-grasp fold, ferredoxin-type
    IPR017896 : 4Fe-4S ferredoxin, iron-sulpur binding domain
    IPR017900 : 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
  GO :
    0006099 : Biological Process : tricarboxylic acid cycle
    0009055 : Molecular Function : electron carrier activity
    0016491 : Molecular Function : oxidoreductase activity
    0051536 : Molecular Function : iron-sulfur cluster binding
    0055114 : Biological Process : oxidation-reduction process
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 25, cyto 3, extr 2, nucl 2
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0000179)
  Ortholog candidate  ( -> Evola )
    Macaca sp. (Macaque) : AB174579
    Mus sp. (Mouse) : BC051934
    Bos sp. (Cow) : BC102067
    Danio sp. (Zebrafish) : BC142799
    Gallus sp. (Chicken) : CR353422
    Tetraodon sp. (Tetraodon) : CR661751
    Tetraodon sp. (Tetraodon) : CR676594
    Rattus sp. (Rat) : DQ403001
    Canis sp. (Dog) : DQ403010
    Equus sp. (Horse) : DQ403012
    Oryzias sp. (Medaka) : ENSORLT00000000328
    Pongo sp. (Orangutan) : ENSPPYT00000002168
    Takifugu sp. (Fugu) : SINFRUT00000130511
    Pan sp. (Chimpanzee) : XM_001155516
    Monodelphis sp. (Opossum) : XM_001376807
    Macaca sp. (Macaque) : XR_012868

HIX0000179
HIT000571257 ( ENST00000466613 )
  (Similar to Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; EC=1.3.5.1; Iron-sulfur subunit of complex II; Ip; Precursor;)
  genome : 17,359,025 - 17,380,526 (21,502)
  query : 1 - 828 (828/828)
  3 exons
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  InterPro :
    IPR001041 : Ferredoxin
    IPR012675 : Beta-grasp fold, ferredoxin-type
  GO :
    0009055 : Molecular Function : electron carrier activity
    0051536 : Molecular Function : iron-sulfur cluster binding
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 29
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0000179)

HIX0000180
HIT000542819 ( ENST00000444885 )
  (Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
  genome : 17,393,256 - 17,445,948 (52,693)
  query : 1 - 4,015 (4,015/4,015)
  13 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  EC number :
    EC 3.5.3.15
  InterPro :
    IPR004303 : Protein-arginine deiminase
    IPR008972 : Cupredoxin
    IPR013530 : Protein-arginine deiminase, C-terminal
    IPR013732 : Protein-arginine deiminase (PAD) N-terminal
  GO :
    0004668 : Molecular Function : protein-arginine deiminase activity
    0005509 : Molecular Function : calcium ion binding
    0005737 : Cellular Component : cytoplasm
    0006464 : Biological Process : protein modification process
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 16, nucl 11.5, cyto_nucl 9, cyto 3.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0000180)

HIX0000180
HIT000043037 ( AK123164 )
  (Similar to Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
  genome : 17,394,095 - 17,401,846 (7,752)
  query : 1 - 2,388 (2,388/2,388)
  4 exons
  identity = 0.997
  3'(0.999;1.000;0.988;0.992)5'
  coverage = 1.000
  EC number :
    EC 3.5.3.15
  InterPro :
    IPR004303 : Protein-arginine deiminase
    IPR013530 : Protein-arginine deiminase, C-terminal
  GO :
    0004668 : Molecular Function : protein-arginine deiminase activity
    0005509 : Molecular Function : calcium ion binding
    0005737 : Cellular Component : cytoplasm
    0006464 : Biological Process : protein modification process
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 22, cyto_mito 4.5, cyto 4, mito 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0000180)

HIX0000180
HIT000583594 ( ENST00000479534 )
  (Similar to Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
  genome : 17,394,095 - 17,401,846 (7,752)
  query : 1 - 2,389 (2,389/2,389)
  4 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  EC number :
    EC 3.5.3.15
  InterPro :
    IPR004303 : Protein-arginine deiminase
    IPR013530 : Protein-arginine deiminase, C-terminal
  GO :
    0004668 : Molecular Function : protein-arginine deiminase activity
    0005509 : Molecular Function : calcium ion binding
    0005737 : Cellular Component : cytoplasm
    0006464 : Biological Process : protein modification process
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 22, cyto_mito 4.5, cyto 4, mito 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0000180)

HIX0000180
HIT000046879 ( AK127006 )
  (Similar to Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
  genome : 17,394,281 - 17,409,921 (15,641)
  query : 1 - 3,612 (3,612/3,612)
  7 exons
  identity = 0.997
  3'(0.999;0.992;1.000;0.998;1.000;0.995;0.984)5'
  coverage = 1.000
  EC number :
    EC 3.5.3.15
  InterPro :
    IPR004303 : Protein-arginine deiminase
    IPR013530 : Protein-arginine deiminase, C-terminal
  GO :
    0004668 : Molecular Function : protein-arginine deiminase activity
    0005509 : Molecular Function : calcium ion binding
    0005737 : Cellular Component : cytoplasm
    0006464 : Biological Process : protein modification process
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 17, nucl 9, extr 3, mito 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0000180)

HIX0000180
HIT000570816 ( ENST00000466151 )
  (Similar to Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
  genome : 17,394,281 - 17,409,921 (15,641)
  query : 1 - 3,612 (3,612/3,612)
  7 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  EC number :
    EC 3.5.3.15
  InterPro :
    IPR004303 : Protein-arginine deiminase
    IPR013530 : Protein-arginine deiminase, C-terminal
  GO :
    0004668 : Molecular Function : protein-arginine deiminase activity
    0005509 : Molecular Function : calcium ion binding
    0005737 : Cellular Component : cytoplasm
    0006464 : Biological Process : protein modification process
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 17, nucl 9, extr 3, mito 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0000180)

HIX0000180
HIT000490407 ( AK295783 )
  (Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
  genome : 17,394,938 - 17,445,948 (51,011)
  query : 1 - 2,333 (2,333/2,333)
  13 exons
  identity = 0.997
  3'(0.998;0.992;1.000;1.000;0.993;0.993;1.000;
      0.991;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  EC number :
    EC 3.5.3.15
  InterPro :
    IPR004303 : Protein-arginine deiminase
    IPR008972 : Cupredoxin
    IPR013530 : Protein-arginine deiminase, C-terminal
    IPR013732 : Protein-arginine deiminase (PAD) N-terminal
  GO :
    0004668 : Molecular Function : protein-arginine deiminase activity
    0005509 : Molecular Function : calcium ion binding
    0005737 : Cellular Component : cytoplasm
    0006464 : Biological Process : protein modification process
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 16, nucl 11.5, cyto_nucl 9, cyto 3.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0000180)

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )