bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0029252
HIT000093788
(
BC035240
)
Representative transcript
(Hypothetical short protein.)
genome : 160,902,255 - 160,919,712 (17,458)
query : 1 - 2,136 (2,136/2,151)
6 exons
identity = 0.997
5'(1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto_nucl 7.5, cyto 5.5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029252)
HIX0029252
HIT000310071 (
ENST00000356006
)
(Hypothetical short protein.)
genome : 160,902,255 - 160,919,712 (17,458)
query : 1 - 2,136 (2,136/2,136)
6 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto_nucl 7.5, cyto 5.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029252)
HIX0200032
HIT000084148
(
AY065973
)
(Intelectin-2 precursor.)
genome : 160,914,817 - 160,924,561 (9,745)
query : 1 - 1,121 (1,121/1,136)
8 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.987
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200032)
HIX0200032
HIT000211991 (
NM_080878
)
(Intelectin-2 precursor.)
genome : 160,914,816 - 160,924,589 (9,774)
query : 1 - 1,150 (1,150/1,150)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
GO :
0005102 : Molecular Function : receptor binding
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200032)
HIX0200032
HIT000252949
(
AY358905
)
Representative transcript
(Intelectin-2 precursor.)
genome : 160,914,816 - 160,924,589 (9,774)
query : 1 - 1,150 (1,150/1,150)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
GO :
0005102 : Molecular Function : receptor binding
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200032)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : AM749042
Bos
sp. (Cow) : AM749043
Danio
sp. (Zebrafish) : BC124278
Danio
sp. (Zebrafish) : BC142874
Macaca
sp. (Macaque) : ENSMMUT00000016860
Pongo
sp. (Orangutan) : ENSPPYT00000000753
Danio
sp. (Zebrafish) : XM_001335874
Monodelphis
sp. (Opossum) : XM_001379240
Equus
sp. (Horse) : XM_001487927
Pan
sp. (Chimpanzee) : XM_513929
HIX0200032
HIT000349309 (
ENST00000368029
)
(Intelectin-2 precursor.)
genome : 160,914,816 - 160,924,589 (9,774)
query : 1 - 1,150 (1,150/1,150)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
GO :
0005102 : Molecular Function : receptor binding
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200032)
HIX0200032
HIT000597840 (
ENST00000494442
)
(Similar to Intelectin-2; Endothelial lectin HL-2; Precursor;)
genome : 160,914,884 - 160,920,802 (5,919)
query : 1 - 884 (884/884)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular
GO :
0005102 : Molecular Function : receptor binding
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 6.5, cyto_nucl 5.5, cyto 3.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200032)
HIX0200032
HIT000501797
(
BC143339
)
(Similar to Intelectin-2; Endothelial lectin HL-2; Precursor;)
genome : 160,914,897 - 160,924,590 (9,694)
query : 1 - 1,081 (1,081/1,081)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
GO :
0005102 : Molecular Function : receptor binding
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, mito 9, cyto_nucl 7.83333, cyto_pero 7.83333,
extr 6, nucl 2.5, pero 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200032)
HIX0200032
HIT000501799
(
BC143341
)
(Intelectin-2; Endothelial lectin HL-2; Precursor;)
genome : 160,914,897 - 160,924,590 (9,694)
query : 1 - 1,067 (1,067/1,067)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.996;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
GO :
0005102 : Molecular Function : receptor binding
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200032)
HIX0200032
HIT000387515
(
BC117225
)
(Intelectin-2; Endothelial lectin HL-2; Precursor;)
genome : 160,914,904 - 160,924,590 (9,687)
query : 1 - 1,060 (1,060/1,060)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.996;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
GO :
0005102 : Molecular Function : receptor binding
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200032)
HIX0200032
HIT000594046 (
ENST00000490489
)
(Similar to Intelectin 1; Intelectin variant;)
genome : 160,920,343 - 160,921,264 (922)
query : 1 - 591 (591/591)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
GO :
0005102 : Molecular Function : receptor binding
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 13.5, nucl 8.5, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200032)
AL354714.22
160911703-160917788 F +
NCBI
AL591806.16
160917789-160927702 F +
NCBI
L1P2
AluSq
AluY
MER20
MER53
AluSc
AluSg
AluSx
U6
AluSz
L1M5
AluSp
AluY
AT_rich
LTR5B
AluSp
LTR5_Hs
MIR
LTR40b
LTR40b
LTR75
LTR40b
L2c
L2c
AluSg
MIRb
AT_rich
AluSx
(TAA)n
L2a
L1MC4
(TA)n
L1MC4
AluSg4
L1MC4
AluSp
FLAM_C
LTR88b
L2a
LTR85c