Clickable map CGI

HIX0001144
HIT000204470 ( NM_014017 )
  (Ragulator complex protein LAMTOR2 isoform 1.)
  genome : 156,024,517 - 156,028,301 (3,785)
  query : 1 - 681 (681/699)
  4 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 0.999
  InterPro :
    IPR004942 : Dynein light chain-related
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 15, cyto 9.5, cyto_nucl 7.5, E.R._mito 7.5
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001144)

HIX0001144
HIT000561261 ( NM_001145264 )
  (Ragulator complex protein LAMTOR2 isoform 2.)
  genome : 156,024,517 - 156,028,301 (3,785)
  query : 1 - 591 (591/609)
  3 exons
  identity = 1.000
  5'(1.000)3'
  coverage = 0.998
  InterPro :
    IPR004942 : Dynein light chain-related
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 18, cyto_nucl 8, cyto 7.5, nucl 5.5
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001144)

HIX0001144
HIT000349584 ( ENST00000368304 )
  (Ragulator complex protein LAMTOR2 isoform 2.)
  genome : 156,024,517 - 156,028,301 (3,785)
  query : 1 - 591 (591/591)
  3 exons
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  InterPro :
    IPR004942 : Dynein light chain-related
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 18.5, cyto_nucl 16.5, nucl 9.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001144)

HIX0001144
HIT000349585 ( ENST00000368305 )
  (Ragulator complex protein LAMTOR2 isoform 1.)
  genome : 156,024,552 - 156,028,299 (3,748)
  query : 1 - 644 (644/644)
  4 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR004942 : Dynein light chain-related
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 15, cyto 9.5, cyto_nucl 7.5, E.R._mito 7.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001144)

HIX0001144
HIT000425952 ( AK307086 )
  Representative transcript
  (Ragulator complex protein LAMTOR2 isoform 2.)
  genome : 156,024,593 - 156,029,379 (4,787)
  query : 3 - 1,305 (1,303/1,305)
  5 exons
  identity = 0.998
  5'(0.996;1.000;0.997)3'
  coverage = 0.998
  InterPro :
    IPR004942 : Dynein light chain-related
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 18, cyto_nucl 8, cyto 7.5, nucl 5.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001144)
  Ortholog candidate  ( -> Evola )
    Mus sp. (Mouse) : BC031816
    Danio sp. (Zebrafish) : BC077153
    Bos sp. (Cow) : BC102146
    Tetraodon sp. (Tetraodon) : CR708977
    Equus sp. (Horse) : ENSECAT00000009429
    Monodelphis sp. (Opossum) : ENSMODT00000021528
    Oryzias sp. (Medaka) : ENSORLT00000020193
    Pongo sp. (Orangutan) : ENSPPYT00000000879
    Takifugu sp. (Fugu) : SINFRUT00000179633
    Rattus sp. (Rat) : XM_001070050
    Macaca sp. (Macaque) : XM_001116330
    Pan sp. (Chimpanzee) : XM_001163747
    Gallus sp. (Chicken) : XM_001236166
    Canis sp. (Dog) : XM_537247

HIX0001144
HIT000001774 ( AF070659 )
  (Ragulator complex protein LAMTOR2 isoform 1.)
  genome : 156,024,605 - 156,028,299 (3,695)
  query : 1 - 589 (589/602)
  4 exons
  identity = 0.992
  5'(1.000;0.985)3'
  coverage = 0.998
  InterPro :
    IPR004942 : Dynein light chain-related
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 15, cyto 9.5, cyto_nucl 7.5, E.R._mito 7.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001144)

HIX0001144
HIT000039760 ( BC024190 )
  (Ragulator complex protein LAMTOR2 isoform 1.)
  genome : 156,024,641 - 156,028,295 (3,655)
  query : 1 - 551 (551/592)
  4 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 0.998
  InterPro :
    IPR004942 : Dynein light chain-related
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 15, cyto 9.5, cyto_nucl 7.5, E.R._mito 7.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001144)

HIX0001144
HIT000349582 ( ENST00000368302 )
  (Similar to Ragulator complex protein LAMTOR2 isoform 2.)
  genome : 156,024,641 - 156,028,200 (3,560)
  query : 1 - 493 (493/493)
  4 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR004942 : Dynein light chain-related
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 9, cyto 9, mito 9, cyto_mito 9
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001144)

HIX0001144
HIT000590824 ( ENST00000487106 )
  (Similar to Uncharacterized protein;)
  genome : 156,024,876 - 156,028,297 (3,422)
  query : 1 - 623 (623/623)
  3 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 23, cyto 5, mito 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001144)

HIX0001144
HIT000568167 ( ENST00000463371 )
  (Similar to Ragulator complex protein LAMTOR2; Endosomal adaptor protein p14; Late endosomal/lysosomal Mp1-interacting protein; Late endosomal/lysosomal adaptor and MAPK and MTOR activator 2; Mitogen-activated protein-binding protein-interacting protein; Roadblock domain-containing protein 3;)
  genome : 156,025,287 - 156,028,297 (3,011)
  query : 1 - 462 (462/462)
  3 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 25.5, cyto_nucl 15.5, nucl 4.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001144)

HIX0001145
HIT000075877 ( AF274025 )
  (Ras-related protein Rab-25.)
  genome : 156,030,966 - 156,040,296 (9,331)
  query : 7 - 1,091 (1,085/1,128)
  5 exons
  identity = 0.998
  5'(0.996;1.000;1.000;1.000;0.997)3'
  coverage = 0.994
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 15, cyto_nucl 11, mito 6, nucl 5, cysk 4
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001145)

HIX0001145
HIT000034603 ( BC009831 )
  (Ras-related protein Rab-25.)
  genome : 156,030,966 - 156,040,294 (9,329)
  query : 1 - 1,084 (1,084/1,101)
  5 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR001806 : Ras GTPase
    IPR003579 : Ras small GTPase, Rab type
    IPR005225 : Small GTP-binding protein
    IPR013753 : Ras
    IPR015595 : Rab11-related
    IPR020851 : Small GTPase
  GO :
    0005525 : Molecular Function : GTP binding
    0007264 : Biological Process : small GTPase mediated signal transduction
    0015031 : Biological Process : protein transport
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cysk 12, cyto_nucl 9, mito 7, nucl 6.5, cyto 6.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001145)

HIX0001145
HIT000207901 ( NM_020387 )
  (Ras-related protein Rab-25.)
  genome : 156,030,966 - 156,040,294 (9,329)
  query : 1 - 1,084 (1,084/1,101)
  5 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR001806 : Ras GTPase
    IPR003579 : Ras small GTPase, Rab type
    IPR005225 : Small GTP-binding protein
    IPR013753 : Ras
    IPR015595 : Rab11-related
    IPR020851 : Small GTPase
  GO :
    0005525 : Molecular Function : GTP binding
    0007264 : Biological Process : small GTPase mediated signal transduction
    0015031 : Biological Process : protein transport
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cysk 12, cyto_nucl 9, mito 7, nucl 6.5, cyto 6.5
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001145)

HIX0001145
HIT000314365 ( ENST00000361084 )
  (Ras-related protein Rab-25.)
  genome : 156,030,966 - 156,040,293 (9,328)
  query : 1 - 1,083 (1,083/1,083)
  5 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR001806 : Ras GTPase
    IPR003579 : Ras small GTPase, Rab type
    IPR005225 : Small GTP-binding protein
    IPR013753 : Ras
    IPR015595 : Rab11-related
    IPR020851 : Small GTPase
  GO :
    0005525 : Molecular Function : GTP binding
    0007264 : Biological Process : small GTPase mediated signal transduction
    0015031 : Biological Process : protein transport
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cysk 12, cyto_nucl 9, mito 7, nucl 6.5, cyto 6.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001145)

HIX0001145
HIT000051111 ( BC033322 )
  (Ras-related protein Rab-25.)
  genome : 156,030,978 - 156,040,294 (9,317)
  query : 3 - 1,074 (1,072/1,089)
  5 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000)3'
  coverage = 0.998
  InterPro :
    IPR001806 : Ras GTPase
    IPR003579 : Ras small GTPase, Rab type
    IPR005225 : Small GTP-binding protein
    IPR013753 : Ras
    IPR015595 : Rab11-related
    IPR020851 : Small GTPase
  GO :
    0005525 : Molecular Function : GTP binding
    0007264 : Biological Process : small GTPase mediated signal transduction
    0015031 : Biological Process : protein transport
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cysk 12, cyto_nucl 9, mito 7, nucl 6.5, cyto 6.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001145)

HIX0001145
HIT000568402 ( ENST00000463614 )
  (Similar to Ras-related protein RABA2a;)
  genome : 156,030,980 - 156,036,073 (5,094)
  query : 1 - 627 (627/627)
  2 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR001806 : Ras GTPase
    IPR003579 : Ras small GTPase, Rab type
    IPR013753 : Ras
    IPR015595 : Rab11-related
    IPR020851 : Small GTPase
  GO :
    0005525 : Molecular Function : GTP binding
    0007264 : Biological Process : small GTPase mediated signal transduction
    0015031 : Biological Process : protein transport
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cysk 14, cyto 9, cyto_nucl 8, nucl 5, extr 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001145)

HIX0001145
HIT000066554 ( AF083124 )
  (Ras-related protein Rab-25; CATX-8; Precursor;)
  genome : 156,030,982 - 156,040,248 (9,267)
  query : 1 - 1,022 (1,022/1,022)
  5 exons
  identity = 0.989
  5'(0.969;1.000;1.000;1.000;0.990)3'
  coverage = 1.000
  InterPro :
    IPR001806 : Ras GTPase
    IPR003579 : Ras small GTPase, Rab type
    IPR005225 : Small GTP-binding protein
    IPR013753 : Ras
    IPR015595 : Rab11-related
    IPR020851 : Small GTPase
  GO :
    0005525 : Molecular Function : GTP binding
    0007264 : Biological Process : small GTPase mediated signal transduction
    0015031 : Biological Process : protein transport
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cysk 12, cyto_nucl 9, mito 7, nucl 6.5, cyto 6.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001145)

HIX0001145
HIT000591034 ( ENST00000487325 )
  (Similar to Ras-related protein Rab-25; CATX-8; Precursor;)
  genome : 156,030,997 - 156,039,897 (8,901)
  query : 1 - 868 (868/868)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR001806 : Ras GTPase
    IPR003577 : Ras small GTPase, Ras type
    IPR003579 : Ras small GTPase, Rab type
    IPR013753 : Ras
    IPR020851 : Small GTPase
  GO :
    0005525 : Molecular Function : GTP binding
    0005622 : Cellular Component : intracellular
    0007264 : Biological Process : small GTPase mediated signal transduction
    0015031 : Biological Process : protein transport
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 15, mito 7, cyto 4, cyto_nucl 4, E.R._mito 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001145)

HIX0001145
HIT000577672 ( ENST00000473336 )
  (Similar to Ras-related protein Rab-25; CATX-8; Precursor;)
  genome : 156,031,174 - 156,040,295 (9,122)
  query : 1 - 681 (681/681)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR001806 : Ras GTPase
    IPR003577 : Ras small GTPase, Ras type
    IPR003579 : Ras small GTPase, Rab type
    IPR013753 : Ras
    IPR020851 : Small GTPase
  GO :
    0005525 : Molecular Function : GTP binding
    0005622 : Cellular Component : intracellular
    0007264 : Biological Process : small GTPase mediated signal transduction
    0015031 : Biological Process : protein transport
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 11, cyto 9, mito 6, cyto_nucl 6, pero 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001145)

HIX0117266
HIT000468615 ( DQ866751 )
  Representative transcript
  (Hypothetical short protein.)
  genome : 156,032,115 - 156,032,418 (304)
  query : 1 - 304 (304/304)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0117266)

HIX0001145
HIT000601215 ( ENST00000497968 )
  (Similar to Ras-related protein Rab-25; CATX-8; Precursor;)
  genome : 156,038,003 - 156,040,156 (2,154)
  query : 1 - 539 (539/539)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR001806 : Ras GTPase
    IPR003577 : Ras small GTPase, Ras type
    IPR003578 : Small GTPase, Rho type
    IPR003579 : Ras small GTPase, Rab type
    IPR013753 : Ras
    IPR020851 : Small GTPase
  GO :
    0005525 : Molecular Function : GTP binding
    0005622 : Cellular Component : intracellular
    0007264 : Biological Process : small GTPase mediated signal transduction
    0015031 : Biological Process : protein transport
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 13, extr 10, cyto 4.5, cyto_nucl 4, nucl 2.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001145)

HIX0001145
HIT000086361 ( BC004416 )
  (Similar to Ras-related protein Rab-25; CATX-8; Precursor;)
  genome : 156,038,080 - 156,040,294 (2,215)
  query : 1 - 600 (600/643)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR001806 : Ras GTPase
    IPR003577 : Ras small GTPase, Ras type
    IPR003579 : Ras small GTPase, Rab type
    IPR013753 : Ras
    IPR020851 : Small GTPase
  GO :
    0005525 : Molecular Function : GTP binding
    0005622 : Cellular Component : intracellular
    0007264 : Biological Process : small GTPase mediated signal transduction
    0015031 : Biological Process : protein transport
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 27, cyto_nucl 16.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001145)

HIX0001146
HIT000485103 ( NM_001093725 )
  (RNA-binding protein MEX3A.)
  genome : 156,041,804 - 156,051,789 (9,986)
  query : 1 - 6,124 (6,124/6,124)
  2 exons
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 18, cyto_nucl 15.5, nucl 9, mito 3
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001146)

AL355388.30
156027630-156043629 F +
NCBI

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )