bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0028498
HIT000059328
(
AB042410
)
Representative transcript
(Similar to Uncharacterized protein;)
genome : 101,003,693 - 101,007,571 (3,879)
query : 1 - 3,484 (3,484/3,517)
2 exons
identity = 0.997
5'(0.995;0.998)3'
coverage = 1.000
InterPro :
IPR000276 : 7TM GPCR, rhodopsin-like
IPR017452 : GPCR, rhodopsin-like superfamily
GO :
0007186 : Biological Process : G-protein coupled receptor protein signaling pathway
0016021 : Cellular Component : integral to membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028498)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB042407
Mus
sp. (Mouse) : AB042408
Danio
sp. (Zebrafish) : ENSDART00000063313
Macaca
sp. (Macaque) : XM_001107294
Pan
sp. (Chimpanzee) : XM_001135440
Gallus
sp. (Chicken) : XM_001232658
Bos
sp. (Cow) : XM_001249526
Monodelphis
sp. (Opossum) : XM_001372133
HIX0028498
HIT000120368 (
ENST00000315033
)
(Similar to Uncharacterized protein;)
genome : 101,003,728 - 101,007,583 (3,856)
query : 1 - 3,465 (3,465/3,465)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, mito 10.5, mito_pero 7.5, pero 3.5, cyto 2,
lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028498)
HIX0028498
HIT000208557 (
NM_022049
)
(Similar to Uncharacterized protein;)
genome : 101,003,728 - 101,007,583 (3,856)
query : 1 - 3,465 (3,465/3,465)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000276 : 7TM GPCR, rhodopsin-like
IPR017452 : GPCR, rhodopsin-like superfamily
GO :
0007186 : Biological Process : G-protein coupled receptor protein signaling pathway
0016021 : Cellular Component : integral to membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028498)
HIX0028498
HIT000094605
(
BC036775
)
(Similar to Uncharacterized protein;)
genome : 101,003,728 - 101,005,592 (1,865)
query : 1 - 1,474 (1,474/1,474)
2 exons
identity = 0.999
5'(0.997;1.000)3'
coverage = 1.000
InterPro :
IPR000276 : 7TM GPCR, rhodopsin-like
IPR017452 : GPCR, rhodopsin-like superfamily
GO :
0007186 : Biological Process : G-protein coupled receptor protein signaling pathway
0016021 : Cellular Component : integral to membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028498)
HIX0160058
HIT000387204
(
BC113861
)
Representative transcript
(Similar to Uncharacterized protein;)
genome : 101,003,902 - 101,004,965 (1,064)
query : 5 - 1,078 (1,074/1,080)
1 exon
identity = 0.984
3'(0.984)5'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.5, nucl 9.5, cyto 8.5, extr 8, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160058)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : BX932206
HIX0028498
HIT000384878
(
AK225748
)
(Similar to Uncharacterized protein;)
genome : 101,004,457 - 101,005,755 (1,299)
query : 1 - 1,299 (1,299/1,299)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR000276 : 7TM GPCR, rhodopsin-like
IPR017452 : GPCR, rhodopsin-like superfamily
GO :
0007186 : Biological Process : G-protein coupled receptor protein signaling pathway
0016021 : Cellular Component : integral to membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028498)
HIX0028498
HIT000386040
(
AY336999
)
(Similar to Uncharacterized protein;)
genome : 101,004,523 - 101,005,677 (1,155)
query : 1 - 1,155 (1,155/1,155)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR000276 : 7TM GPCR, rhodopsin-like
IPR017452 : GPCR, rhodopsin-like superfamily
GO :
0007186 : Biological Process : G-protein coupled receptor protein signaling pathway
0016021 : Cellular Component : integral to membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028498)
HIX0028498
HIT000066939
(
AF086060
)
(Hypothetical short protein.)
genome : 101,006,932 - 101,007,583 (652)
query : 1 - 652 (652/661)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 10.5, cysk 7, nucl 3.5,
cysk_plas 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028498)
AC099670.2
100997638-101013637 F -
NCBI
L2c
ORSL-2a
MLT1J
MER5A
MLT1J
MIR
MER115
AluJr
MER115
L1M5
L1M5
L2
L2a
L1MC1
(TC)n
GC_rich
AT_rich
MER115
L1MC5
MIR
L3b
L3
L1ME4a
AluSz
L1M6
L3
MIRb
AluJr
AT_rich
L3