bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
G.gallus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_414208
genome : 20,441,046 - 20,485,290 (44,245)
query : 1 - 3,828 (3,828/3,828)
14 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSGALT00000010149
genome : 20,442,781 - 20,485,314 (42,534)
query : 1 - 2,117 (2,117/2,117)
14 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_414207
genome : 20,485,358 - 20,488,386 (3,029)
query : 1 - 1,048 (1,048/1,048)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
CR406437
Representative transcript
genome : 20,485,381 - 20,487,914 (2,534)
query : 4 - 1,246 (1,243/1,249)
4 exons
identity = 0.991
5'(1.000;0.989;0.988;1.000)3'
coverage = 0.995
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000068156
Pan
sp. (Chimpanzee) : XM_001138135
Pongo
sp. (Orangutan) : ENSPPYT00000008980
Macaca
sp. (Macaque) : XM_001090102
Mus
sp. (Mouse) : BC114968
Rattus
sp. (Rat) : ENSRNOT00000019740
Canis
sp. (Dog) : XM_844929
Equus
sp. (Horse) : ENSECAT00000020893
Bos
sp. (Cow) : BC146228
Monodelphis
sp. (Opossum) : ENSMODT00000004867
Danio
sp. (Zebrafish) : BC154657
Oryzias
sp. (Medaka) : ENSORLT00000006958
Tetraodon
sp. (Tetraodon) : CR648228
ENSGALT00000010103
genome : 20,485,389 - 20,487,917 (2,529)
query : 1 - 548 (548/548)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
CR405779
genome : 20,485,390 - 20,486,977 (1,588)
query : 1 - 1,093 (1,093/1,093)
2 exons
identity = 0.986
5'(1.000;0.986)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
BX929713
genome : 20,485,961 - 20,486,943 (983)
query : 1 - 982 (982/982)
1 exon
identity = 0.988
5'(0.988)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR390352
genome : 20,486,158 - 20,486,947 (790)
query : 1 - 790 (790/793)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 0.996
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR391548
genome : 20,489,023 - 20,489,822 (800)
query : 1 - 800 (800/800)
1 exon
identity = 0.991
3'(0.991)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR388838
Representative transcript
genome : 20,489,787 - 20,492,005 (2,219)
query : 2 - 823 (822/828)
7 exons
identity = 0.995
3'(0.992;1.000;1.000;1.000;0.969;1.000;1.000)5'
coverage = 0.993
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000035131
Pan
sp. (Chimpanzee) : XM_001162168
Pongo
sp. (Orangutan) : ENSPPYT00000006695
Macaca
sp. (Macaque) : XM_001107039
Mus
sp. (Mouse) : BC055866
Canis
sp. (Dog) : DQ116955
Equus
sp. (Horse) : XM_001493609
Bos
sp. (Cow) : BC133551
Monodelphis
sp. (Opossum) : ENSMODT00000005712
Danio
sp. (Zebrafish) : BC079522
Danio
sp. (Zebrafish) : XM_001923008
Oryzias
sp. (Medaka) : ENSORLT00000007713
H.sapiens
(Human) : HIT000557591
Pan
sp. (Chimpanzee) : ENSPTRT00000060060
Macaca
sp. (Macaque) : ENSMMUT00000017434
Mus
sp. (Mouse) : NM_001007462
Rattus
sp. (Rat) : XM_001079405
Equus
sp. (Horse) : ENSECAT00000000322
Bos
sp. (Cow) : XM_869686
Monodelphis
sp. (Opossum) : XM_001376904
Oryzias
sp. (Medaka) : ENSORLT00000006963
Takifugu
sp. (Fugu) : SINFRUT00000132775
XM_001232210
genome : 20,489,783 - 20,492,116 (2,334)
query : 19 - 955 (937/955)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.981
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSGALT00000010095
genome : 20,489,988 - 20,491,466 (1,479)
query : 1 - 555 (555/555)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BX935675
genome : 20,494,555 - 20,496,028 (1,474)
query : 1 - 1,472 (1,472/1,472)
1 exon
identity = 0.986
3'(0.986)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
AJ851739
Representative transcript
genome : 20,494,669 - 20,516,485 (21,817)
query : 2 - 4,474 (4,473/4,489)
11 exons
identity = 0.963
3'(0.986;0.984;0.984)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000058204
Pan
sp. (Chimpanzee) : XM_001138672
Pongo
sp. (Orangutan) : ENSPPYT00000008983
Macaca
sp. (Macaque) : XM_001090215
Mus
sp. (Mouse) : AF038029
Rattus
sp. (Rat) : ENSRNOT00000020212
Canis
sp. (Dog) : XM_546780
Equus
sp. (Horse) : XM_001917055
Bos
sp. (Cow) : XM_602121
Monodelphis
sp. (Opossum) : XM_001376914
Danio
sp. (Zebrafish) : XM_681892
Oryzias
sp. (Medaka) : ENSORLT00000007022
Tetraodon
sp. (Tetraodon) : GSTENT00017458001
Takifugu
sp. (Fugu) : SINFRUT00000141517
NM_001030580
genome : 20,494,669 - 20,516,485 (21,817)
query : 2 - 4,474 (4,473/4,489)
11 exons
identity = 0.963
3'(0.986;0.984;0.984)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Contig93.13
20482896-20493539 W +
659
20493540-20494198 N
Contig93.14
20494199-20496927 W +
10
20496928-20496937 N
Contig93.15
20496938-20498895 W +
CR1-C
CR1-F2
G-rich
(TCCCC)n
(CAAAAA)n
AT_rich
(GCATG)n
(GCATG)n
(GCATG)n
T-rich
(A)n
(T)n
AT_rich
(A)n