bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
G.gallus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
CR522983
Representative transcript
genome : 3,846,238 - 3,847,848 (1,611)
query : 1 - 1,611 (1,611/1,613)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 0.999
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
XM_422213
genome : 3,849,390 - 3,859,185 (9,796)
query : 1 - 1,486 (1,486/1,486)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSGALT00000004312
genome : 3,849,655 - 3,859,149 (9,495)
query : 1 - 1,185 (1,185/1,185)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
CR386837
Representative transcript
genome : 3,849,743 - 3,859,137 (9,395)
query : 73 - 1,157 (1,085/1,157)
8 exons
identity = 0.998
3'(0.994;1.000;1.000;0.987;1.000;1.000;1.000;
1.000)5'
coverage = 0.938
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000248560
Pan
sp. (Chimpanzee) : XM_001174268
Pongo
sp. (Orangutan) : CR858137
Macaca
sp. (Macaque) : XM_001118183
Mus
sp. (Mouse) : AK030152
Rattus
sp. (Rat) : U70372
Canis
sp. (Dog) : XM_536143
Equus
sp. (Horse) : XM_001491629
Bos
sp. (Cow) : XM_582577
Monodelphis
sp. (Opossum) : ENSMODT00000001268
Danio
sp. (Zebrafish) : BC124286
Oryzias
sp. (Medaka) : ENSORLT00000017983
Tetraodon
sp. (Tetraodon) : CR639086
Takifugu
sp. (Fugu) : SINFRUT00000151051
XM_001233443
genome : 3,859,614 - 3,861,787 (2,174)
query : 1 - 597 (597/597)
4 exons
identity = 0.978
3'(1.000;1.000;1.000;0.797)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSGALT00000004341
Representative transcript
genome : 3,860,842 - 3,890,348 (29,507)
query : 1 - 1,538 (1,538/1,538)
12 exons
identity = 0.998
3'(1.000;0.989)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000000181
Pan
sp. (Chimpanzee) : XR_024316
Pongo
sp. (Orangutan) : ENSPPYT00000000713
Macaca
sp. (Macaque) : XM_001115782
Mus
sp. (Mouse) : AK018149
Rattus
sp. (Rat) : AF037071
Canis
sp. (Dog) : XM_846744
Equus
sp. (Horse) : XM_001491537
Bos
sp. (Cow) : XR_027948
Monodelphis
sp. (Opossum) : XM_001369654
Gallus
sp. (Chicken) : CR406461
Danio
sp. (Zebrafish) : BC091560
Danio
sp. (Zebrafish) : XM_001919779
Oryzias
sp. (Medaka) : ENSORLT00000013634
Tetraodon
sp. (Tetraodon) : GSTENT00014377001
Tetraodon
sp. (Tetraodon) : GSTENT00015683001
Takifugu
sp. (Fugu) : SINFRUT00000131346
Takifugu
sp. (Fugu) : SINFRUT00000158489
XM_422214
Representative transcript
genome : 3,861,876 - 3,863,421 (1,546)
query : 1 - 1,131 (1,131/1,131)
3 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000041749
Pongo
sp. (Orangutan) : ENSPPYT00000000712
Macaca
sp. (Macaque) : AB168799
Mus
sp. (Mouse) : AK005990
Rattus
sp. (Rat) : XM_001076814
Canis
sp. (Dog) : ENSCAFT00000036623
Equus
sp. (Horse) : ENSECAT00000017266
Bos
sp. (Cow) : BC110262
Monodelphis
sp. (Opossum) : ENSMODT00000001236
ENSGALT00000033987
genome : 3,861,936 - 3,863,167 (1,232)
query : 1 - 814 (814/814)
3 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Contig40.122
3846440-3859187 W +
10
3859188-3859197 N
Contig40.123
3859198-3859824 W +
949
3859825-3860773 N
Contig40.124
3860774-3862439 W +
CR1-Y4
GC_rich
GC_rich