bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
G.gallus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_422208
genome : 3,737,881 - 3,807,128 (69,248)
query : 1 - 1,905 (1,905/1,905)
15 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSGALT00000004188
genome : 3,738,047 - 3,807,128 (69,082)
query : 1 - 1,944 (1,944/1,944)
16 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSGALT00000040110
genome : 3,738,047 - 3,807,128 (69,082)
query : 1 - 1,953 (1,953/1,953)
15 exons
identity = 0.997
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
CR353243
Representative transcript
genome : 3,807,377 - 3,808,289 (913)
query : 1 - 915 (915/953)
1 exon
identity = 0.985
5'(0.985)3'
coverage = 0.960
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
XM_422209
genome : 3,809,145 - 3,820,918 (11,774)
query : 1 - 3,076 (3,076/3,076)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
CR523972
Representative transcript
genome : 3,809,151 - 3,810,909 (1,759)
query : 1 - 1,485 (1,485/1,488)
2 exons
identity = 0.998
3'(0.998;1.000)5'
coverage = 0.998
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000262519
Pan
sp. (Chimpanzee) : ENSPTRT00000002909
Pongo
sp. (Orangutan) : ENSPPYT00000000714
Macaca
sp. (Macaque) : XM_001118163
Mus
sp. (Mouse) : AK172136
Rattus
sp. (Rat) : XM_001072555
Canis
sp. (Dog) : XM_545778
Equus
sp. (Horse) : ENSECAT00000009986
Bos
sp. (Cow) : BC147922
Monodelphis
sp. (Opossum) : ENSMODT00000001210
Danio
sp. (Zebrafish) : BC151905
Danio
sp. (Zebrafish) : NM_001044849
Oryzias
sp. (Medaka) : ENSORLT00000017380
Oryzias
sp. (Medaka) : ENSORLT00000020853
Takifugu
sp. (Fugu) : SINFRUT00000130031
ENSGALT00000004201
genome : 3,809,929 - 3,820,843 (10,915)
query : 1 - 2,223 (2,223/2,223)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Contig40.115
3802030-3812105 W +
870
3812106-3812975 N
Contig40.116
3812976-3814740 W +
688
3814741-3815428 N
Contig40.117
3815429-3817659 W +
1159
3817660-3818029 N
CR1-Y2
T-rich
(TTA)n
(TAA)n
GGERVL18-LTR