bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
E.caballus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSECAT00000019837
Representative transcript
genome : 35,712,760 - 35,718,075 (5,316)
query : 1 - 1,601 (1,601/1,601)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000325968
Pan
sp. (Chimpanzee) : XM_001170254
Pongo
sp. (Orangutan) : ENSPPYT00000016085
Macaca
sp. (Macaque) : ENSMMUT00000031229
Mus
sp. (Mouse) : AK147868
Rattus
sp. (Rat) : BC085863
Canis
sp. (Dog) : XM_855393
Bos
sp. (Cow) : XR_028255
Monodelphis
sp. (Opossum) : XM_001380488
Gallus
sp. (Chicken) : XR_026755
Danio
sp. (Zebrafish) : BC055518
Oryzias
sp. (Medaka) : ENSORLT00000000925
Tetraodon
sp. (Tetraodon) : GSTENT00027301001
Takifugu
sp. (Fugu) : SINFRUT00000174003
XM_001492912
genome : 35,712,760 - 35,718,067 (5,308)
query : 1 - 1,593 (1,593/1,593)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001494739
Representative transcript
genome : 35,719,531 - 35,726,893 (7,363)
query : 1 - 1,532 (1,532/1,532)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000030144
Pan
sp. (Chimpanzee) : XM_516493
Pongo
sp. (Orangutan) : ENSPPYT00000016086
Macaca
sp. (Macaque) : XM_001087877
Mus
sp. (Mouse) : AK076113
Rattus
sp. (Rat) : ENSRNOT00000017469
Canis
sp. (Dog) : ENSCAFT00000015997
Bos
sp. (Cow) : BC147989
Monodelphis
sp. (Opossum) : XM_001380506
Gallus
sp. (Chicken) : XM_414243
Danio
sp. (Zebrafish) : BC044361
Oryzias
sp. (Medaka) : ENSORLT00000004121
Tetraodon
sp. (Tetraodon) : CR678534
Takifugu
sp. (Fugu) : SINFRUT00000149309
ENSECAT00000026482
genome : 35,719,923 - 35,726,893 (6,971)
query : 1 - 1,418 (1,418/1,418)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
contig_8458
35715212-35731211 W +
L2b
(CGGGGG)n
MIR
L1ME3D
L1ME1
L1ME3D
HAL1
(GGA)n
MIRb
MIRb
(TTTTA)n
ERE1
L1MB2
ERE2
ERE1
ERE2
L1MB2
L2
MLT1H
L2a