bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
E.caballus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSECAT00000018987
genome : 41,791,150 - 42,069,102 (277,953)
query : 1 - 600 (600/600)
5 exons
identity = 0.974
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSECAT00000011222
genome : 41,922,662 - 42,019,499 (96,838)
query : 1 - 608 (608/608)
6 exons
identity = 1.000
5'()3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSECAT00000013419
genome : 41,953,336 - 41,957,931 (4,596)
query : 1 - 2,367 (2,367/2,367)
8 exons
identity = 0.999
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001496068
Representative transcript
genome : 41,953,336 - 41,957,931 (4,596)
query : 1 - 2,376 (2,376/2,376)
8 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000033597
Pan
sp. (Chimpanzee) : ENSPTRT00000013926
Pongo
sp. (Orangutan) : ENSPPYT00000008166
Macaca
sp. (Macaque) : ENSMMUT00000002812
Mus
sp. (Mouse) : AK078694
Rattus
sp. (Rat) : BC098800
Canis
sp. (Dog) : XM_537017
Bos
sp. (Cow) : BC114046
Monodelphis
sp. (Opossum) : ENSMODT00000036014
Gallus
sp. (Chicken) : AJ719275
Danio
sp. (Zebrafish) : BC045501
Oryzias
sp. (Medaka) : ENSORLT00000009610
Tetraodon
sp. (Tetraodon) : GSTENT00024069001
Takifugu
sp. (Fugu) : SINFRUT00000146163
ENSECAT00000014860
genome : 41,958,918 - 41,959,925 (1,008)
query : 1 - 570 (570/570)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001915361
Representative transcript
genome : 41,958,918 - 41,959,925 (1,008)
query : 1 - 570 (570/570)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000242976
Pan
sp. (Chimpanzee) : XR_022312
Pongo
sp. (Orangutan) : ENSPPYT00000008165
Macaca
sp. (Macaque) : XR_010418
Mus
sp. (Mouse) : AK155810
Rattus
sp. (Rat) : BC079205
Canis
sp. (Dog) : ENSCAFT00000031196
Bos
sp. (Cow) : ENSBTAT00000047834
Monodelphis
sp. (Opossum) : ENSMODT00000021276
Danio
sp. (Zebrafish) : ENSDART00000079368
Oryzias
sp. (Medaka) : ENSORLT00000000327
Tetraodon
sp. (Tetraodon) : CR688769
Takifugu
sp. (Fugu) : SINFRUT00000176309
XM_001497142
Representative transcript
genome : 41,959,975 - 41,962,867 (2,893)
query : 1 - 1,169 (1,169/1,169)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000079607
Pan
sp. (Chimpanzee) : XM_001156579
Pongo
sp. (Orangutan) : ENSPPYT00000008164
Macaca
sp. (Macaque) : XM_001086388
Macaca
sp. (Macaque) : XM_001084320
Mus
sp. (Mouse) : BC027427
Rattus
sp. (Rat) : BC099240
Canis
sp. (Dog) : XM_537018
Bos
sp. (Cow) : BC109588
Monodelphis
sp. (Opossum) : XM_001365645
Gallus
sp. (Chicken) : ENSGALT00000001529
Danio
sp. (Zebrafish) : BC051775
Oryzias
sp. (Medaka) : ENSORLT00000009239
Tetraodon
sp. (Tetraodon) : CR691698
Takifugu
sp. (Fugu) : SINFRUT00000176347
ENSECAT00000015282
genome : 41,960,181 - 41,961,593 (1,413)
query : 1 - 810 (810/810)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001497127
Representative transcript
genome : 41,962,940 - 41,964,270 (1,331)
query : 1 - 699 (699/699)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000086428
Mus
sp. (Mouse) : AK009713
Bos
sp. (Cow) : XM_594248
Monodelphis
sp. (Opossum) : XM_001373199
Danio
sp. (Zebrafish) : BC091543
Tetraodon
sp. (Tetraodon) : CR697229
Takifugu
sp. (Fugu) : SINFRUT00000168563
XM_001495983
Representative transcript
genome : 41,964,580 - 41,967,221 (2,642)
query : 1 - 1,408 (1,408/1,408)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000325973
Pan
sp. (Chimpanzee) : XM_510716
Pongo
sp. (Orangutan) : ENSPPYT00000008163
Macaca
sp. (Macaque) : ENSMMUT00000002807
Rattus
sp. (Rat) : Y17258
Canis
sp. (Dog) : XM_547213
Bos
sp. (Cow) : ENSBTAT00000022975
Monodelphis
sp. (Opossum) : XM_001365582
Gallus
sp. (Chicken) : XM_426761
Oryzias
sp. (Medaka) : ENSORLT00000009584
Tetraodon
sp. (Tetraodon) : GSTENT00024067001
Takifugu
sp. (Fugu) : SINFRUT00000167730
ENSECAT00000015971
genome : 41,964,904 - 41,966,722 (1,819)
query : 1 - 1,173 (1,173/1,173)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001497093
Representative transcript
genome : 41,969,344 - 41,975,683 (6,340)
query : 1 - 1,866 (1,866/1,866)
19 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.961;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000251041
Pan
sp. (Chimpanzee) : XM_510715
Pongo
sp. (Orangutan) : CR858729
Macaca
sp. (Macaque) : XM_001118510
Mus
sp. (Mouse) : AK129465
Rattus
sp. (Rat) : AY303973
Canis
sp. (Dog) : ENSCAFT00000031231
Bos
sp. (Cow) : BT020891
Monodelphis
sp. (Opossum) : ENSMODT00000021254
Gallus
sp. (Chicken) : ENSGALT00000003935
Danio
sp. (Zebrafish) : ENSDART00000105623
Oryzias
sp. (Medaka) : ENSORLT00000009574
Tetraodon
sp. (Tetraodon) : GSTENT00004816001
Takifugu
sp. (Fugu) : SINFRUT00000180845
ENSECAT00000018740
genome : 41,969,344 - 41,974,625 (5,282)
query : 1 - 1,818 (1,818/1,818)
18 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.961;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
contig_40135
41957900-41958110 W +
776
41958111-41958886 N
contig_40136
41958887-41962334 W +
200
41962335-41962534 N
contig_40137
41962535-41973899 W +
C-rich
GC_rich
(CTCCG)n
GC_rich