bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
E.caballus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSECAT00000028824
Representative transcript
genome : 41,385,068 - 42,648,208 (1,263,141)
query : 1 - 2,619 (2,619/2,619)
18 exons
identity = 0.984
3'(0.793)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000001250
Pan
sp. (Chimpanzee) : ENSPTRT00000002613
Pongo
sp. (Orangutan) : ENSPPYT00000012371
Macaca
sp. (Macaque) : XM_001115875
Mus
sp. (Mouse) : AK082719
Rattus
sp. (Rat) : AF247452
Canis
sp. (Dog) : ENSCAFT00000026858
Bos
sp. (Cow) : XM_588153
Monodelphis
sp. (Opossum) : XM_001366818
Gallus
sp. (Chicken) : XM_425050
Danio
sp. (Zebrafish) : XM_679638
Oryzias
sp. (Medaka) : ENSORLT00000005410
ENSECAT00000026897
genome : 41,916,937 - 41,919,881 (2,945)
query : 1 - 1,528 (1,528/1,528)
6 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001495102
Representative transcript
genome : 41,916,937 - 41,919,881 (2,945)
query : 1 - 1,528 (1,528/1,528)
6 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000087663
Pan
sp. (Chimpanzee) : XM_513881
Pongo
sp. (Orangutan) : ENSPPYT00000000867
Macaca
sp. (Macaque) : XM_001113738
Mus
sp. (Mouse) : AK160793
Rattus
sp. (Rat) : BC079294
Canis
sp. (Dog) : ENSCAFT00000026647
Bos
sp. (Cow) : BC119876
Monodelphis
sp. (Opossum) : XM_001374737
Gallus
sp. (Chicken) : XM_424180
Oryzias
sp. (Medaka) : ENSORLT00000002006
Tetraodon
sp. (Tetraodon) : CR703229
ENSECAT00000001162
Representative transcript
genome : 41,920,973 - 41,927,725 (6,753)
query : 1 - 1,380 (1,380/1,380)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000270998
Pan
sp. (Chimpanzee) : ENSPTRT00000002674
Pongo
sp. (Orangutan) : ENSPPYT00000000868
Macaca
sp. (Macaque) : ENSMMUT00000000136
Mus
sp. (Mouse) : AK009760
Rattus
sp. (Rat) : BC101913
Canis
sp. (Dog) : XM_849873
Bos
sp. (Cow) : BT020827
Monodelphis
sp. (Opossum) : XM_001374724
Tetraodon
sp. (Tetraodon) : CR690050
Tetraodon
sp. (Tetraodon) : GSTENT00019328001
Takifugu
sp. (Fugu) : SINFRUT00000182723
XM_001500083
genome : 41,920,992 - 41,925,429 (4,438)
query : 1 - 1,188 (1,188/1,188)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001500077
Representative transcript
genome : 41,925,568 - 41,952,606 (27,039)
query : 1 - 3,261 (3,261/3,261)
23 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.978;1.000;
1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000000806
Pan
sp. (Chimpanzee) : ENSPTRT00000049017
Pongo
sp. (Orangutan) : ENSPPYT00000000869
Macaca
sp. (Macaque) : ENSMMUT00000000134
Mus
sp. (Mouse) : AK129286
Rattus
sp. (Rat) : XM_001059906
Canis
sp. (Dog) : XM_547535
Bos
sp. (Cow) : BC134680
Monodelphis
sp. (Opossum) : XM_001374691
Gallus
sp. (Chicken) : XM_423228
Danio
sp. (Zebrafish) : BC096955
Oryzias
sp. (Medaka) : ENSORLT00000020331
Tetraodon
sp. (Tetraodon) : GSTENT00019522001
Takifugu
sp. (Fugu) : SINFRUT00000127468
ENSECAT00000003910
genome : 41,927,981 - 41,952,600 (24,620)
query : 1 - 3,048 (3,048/3,048)
22 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.978;1.000;1.000;
1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSECAT00000022658
Representative transcript
genome : 41,954,803 - 41,959,142 (4,340)
query : 1 - 1,173 (1,173/1,173)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000259850
Pan
sp. (Chimpanzee) : XM_001164805
Pongo
sp. (Orangutan) : CR859438
Macaca
sp. (Macaque) : AB171221
Mus
sp. (Mouse) : AK139144
Rattus
sp. (Rat) : XM_001059976
Bos
sp. (Cow) : BC112862
Monodelphis
sp. (Opossum) : ENSMODT00000021472
Gallus
sp. (Chicken) : BX929680
Danio
sp. (Zebrafish) : XM_694084
Oryzias
sp. (Medaka) : ENSORLT00000020336
Takifugu
sp. (Fugu) : SINFRUT00000127469
XM_001495082
genome : 41,956,346 - 41,959,103 (2,758)
query : 1 - 1,020 (1,020/1,020)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.996)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
contig_38651
41919087-41955668 W +
284
41955669-41955952 N
contig_38652
41955953-41959086 W +