bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
E.caballus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001498334
Representative transcript
genome : 22,599,664 - 22,903,305 (303,642)
query : 1 - 15,219 (15,219/15,219)
84 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000097592
Pan
sp. (Chimpanzee) : XM_511085
Pongo
sp. (Orangutan) : ENSPPYT00000008853
Mus
sp. (Mouse) : AY173049
Rattus
sp. (Rat) : BC091376
Canis
sp. (Dog) : ENSCAFT00000032120
Monodelphis
sp. (Opossum) : ENSMODT00000018196
Gallus
sp. (Chicken) : ENSGALT00000003789
Oryzias
sp. (Medaka) : ENSORLT00000016211
Takifugu
sp. (Fugu) : SINFRUT00000143351
ENSECAT00000013535
genome : 22,599,664 - 22,895,359 (295,696)
query : 1 - 14,607 (14,607/14,607)
86 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSECAT00000013630
genome : 22,599,691 - 22,895,359 (295,669)
query : 1 - 14,556 (14,556/14,556)
86 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001500754
Representative transcript
genome : 22,909,203 - 23,013,221 (104,019)
query : 1 - 2,781 (2,781/2,781)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000013047
Pan
sp. (Chimpanzee) : XM_001170940
Pongo
sp. (Orangutan) : ENSPPYT00000008854
Macaca
sp. (Macaque) : ENSMMUT00000039240
Mus
sp. (Mouse) : AK084520
Rattus
sp. (Rat) : AY220476
Canis
sp. (Dog) : ENSCAFT00000032107
Bos
sp. (Cow) : BC133600
Monodelphis
sp. (Opossum) : ENSMODT00000029719
Gallus
sp. (Chicken) : AJ720669
Danio
sp. (Zebrafish) : BC078425
Oryzias
sp. (Medaka) : ENSORLT00000008347
Tetraodon
sp. (Tetraodon) : GSTENT00034358001
Takifugu
sp. (Fugu) : SINFRUT00000176242
ENSECAT00000013402
genome : 22,909,412 - 23,013,323 (103,912)
query : 1 - 2,674 (2,674/2,674)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSECAT00000000215
Representative transcript
genome : 23,020,098 - 23,033,372 (13,275)
query : 1 - 1,743 (1,743/1,743)
13 exons
identity = 0.991
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.895;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000242390
Pan
sp. (Chimpanzee) : XM_511083
Pongo
sp. (Orangutan) : ENSPPYT00000008856
Macaca
sp. (Macaque) : XM_001100801
Mus
sp. (Mouse) : BC060632
Rattus
sp. (Rat) : XM_226503
Canis
sp. (Dog) : XM_848070
Bos
sp. (Cow) : XM_600126
Monodelphis
sp. (Opossum) : ENSMODT00000029720
Danio
sp. (Zebrafish) : XM_001919249
Oryzias
sp. (Medaka) : ENSORLT00000019334
Oryzias
sp. (Medaka) : ENSORLT00000020328
ENSECAT00000012792
genome : 23,037,212 - 23,046,696 (9,485)
query : 1 - 754 (754/754)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001500794
Representative transcript
genome : 23,037,212 - 23,046,696 (9,485)
query : 1 - 754 (754/754)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000294975
Pan
sp. (Chimpanzee) : XM_511082
Pongo
sp. (Orangutan) : ENSPPYT00000008858
Macaca
sp. (Macaque) : XM_001107090
Mus
sp. (Mouse) : AK008082
Rattus
sp. (Rat) : BC076391
Canis
sp. (Dog) : XM_848059
Bos
sp. (Cow) : BC146187
Monodelphis
sp. (Opossum) : XM_001375759
Danio
sp. (Zebrafish) : NM_001128701
contig_27273
22881212-23014431 W +
941
23014432-23015372 N
contig_27274
23015373-23017705 W +
100
23017706-23017805 N
contig_27275
23017806-23021220 W +
1070
23021221-23022290 N
contig_27276
23022291-23025151 W +
354
23025152-23025505 N
contig_27277
23025506-23036464 W +
100
23036465-23036564 N
contig_27278
23036565-23041211 W +