bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
D.rerio
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSDART00000103725
genome : 14,053,069 - 14,066,218 (13,150)
query : 1 - 1,756 (1,756/1,770)
12 exons
identity = 0.970
5'(1.000;1.000;0.977;1.000;0.887;0.910;0.991;
1.000;1.000;1.000;0.983;0.936)3'
coverage = 0.992
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000089850
genome : 14,053,225 - 14,063,833 (10,609)
query : 1 - 1,434 (1,434/1,434)
10 exons
identity = 0.969
5'(1.000;1.000;1.000;1.000;0.894;0.908;1.000;
0.967;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000103720
Representative transcript
genome : 14,053,294 - 14,065,386 (12,093)
query : 1 - 1,470 (1,470/1,470)
14 exons
identity = 0.977
5'(1.000;1.000;0.977;1.000;0.889;1.000;0.958;
0.984;0.991;1.000;1.000;1.000;0.946;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000431659
Pan
sp. (Chimpanzee) : XM_001167680
Pongo
sp. (Orangutan) : ENSPPYT00000008653
Macaca
sp. (Macaque) : AF286026
Mus
sp. (Mouse) : BC066216
Rattus
sp. (Rat) : AB021971
Canis
sp. (Dog) : AB425320
Equus
sp. (Horse) : ENSECAT00000012436
Bos
sp. (Cow) : U09198
Monodelphis
sp. (Opossum) : ENSMODT00000001665
Gallus
sp. (Chicken) : AF237673
Oryzias
sp. (Medaka) : ENSORLT00000017076
Takifugu
sp. (Fugu) : SINFRUT00000141211
H.sapiens
(Human) : HIT000468751
Pan
sp. (Chimpanzee) : XM_001175202
Pongo
sp. (Orangutan) : ENSPPYT00000017807
Macaca
sp. (Macaque) : AF286446
Mus
sp. (Mouse) : BC054119
Rattus
sp. (Rat) : M80233
Canis
sp. (Dog) : AB183140
Equus
sp. (Horse) : XM_001501849
Bos
sp. (Cow) : XR_028647
Monodelphis
sp. (Opossum) : ENSMODT00000001661
Gallus
sp. (Chicken) : XM_425275
Oryzias
sp. (Medaka) : ENSORLT00000006409
Tetraodon
sp. (Tetraodon) : GSTENT00013866001
Takifugu
sp. (Fugu) : SINFRUT00000146769
ENSDART00000027337
genome : 14,053,294 - 14,063,833 (10,540)
query : 1 - 1,365 (1,365/1,365)
12 exons
identity = 0.951
5'(1.000;1.000;1.000;1.000;0.889;0.755;0.987;
0.918;0.911;0.974;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Zv7_scaffold1582
14051340-14067339 W +
(TTTG)n
(TTTG)n
(TTTG)n
(TTTG)n
(TTTG)n
Dr001101
Dr000256
(CA)n
(CA)n
CR1-3_DR
HATN12_DR
HATN12_DR
HATN12_DR
Dr000459
Dr000160
(TAA)n
Dr000160
TDR9
(TTA)n
TDR9
HATN17_DR
(TTA)n
Dr000055
HE1_DR1
(CA)n
HE1_DR1
(CA)n
(TG)n
Polinton-1_DR
Polinton-1_DR
(CA)n
(TG)n
(TG)n
(TTAA)n
TDR2
AT_rich
TC1DR3
TC1DR3
(TG)n
TDR18
HE1_DR1
TDR18
TDR16
Dr000243
(CA)n
Dr000053
Dr000053