bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
D.rerio
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
BC100052
genome : 25,925,812 - 26,573,109 (647,298)
query : 1 - 1,854 (1,854/1,873)
10 exons
identity = 1.000
3'()5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
NM_001034184
genome : 25,925,812 - 26,573,109 (647,298)
query : 1 - 1,854 (1,854/1,873)
10 exons
identity = 1.000
3'()5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000041443
genome : 25,925,980 - 26,572,842 (646,863)
query : 1 - 1,419 (1,419/1,419)
10 exons
identity = 1.000
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
CU638803
genome : 25,926,011 - 26,572,928 (646,918)
query : 1 - 1,459 (1,459/1,459)
10 exons
identity = 0.997
3'()5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
XM_689041
genome : 26,145,102 - 26,184,862 (39,761)
query : 1 - 6,340 (6,340/6,340)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000091675
genome : 26,159,116 - 26,183,835 (24,720)
query : 1 - 5,682 (5,682/5,682)
21 exons
identity = 0.996
5'(1.000;1.000;0.935;0.973;1.000;0.974;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.994;0.976;0.979;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000091689
Representative transcript
genome : 26,159,116 - 26,183,835 (24,720)
query : 1 - 5,610 (5,610/5,610)
23 exons
identity = 0.993
5'(1.000;1.000;0.935;0.973;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999;0.974;1.000;0.974;1.000;0.976;0.985;
1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000058298
Pan
sp. (Chimpanzee) : XR_025223
Pongo
sp. (Orangutan) : ENSPPYT00000010871
Macaca
sp. (Macaque) : ENSMMUT00000004321
Mus
sp. (Mouse) : AK140637
Rattus
sp. (Rat) : XM_001076585
Canis
sp. (Dog) : XM_542202
Bos
sp. (Cow) : XM_604945
Monodelphis
sp. (Opossum) : ENSMODT00000006426
Oryzias
sp. (Medaka) : ENSORLT00000016562
Tetraodon
sp. (Tetraodon) : GSTENT00008284001
Takifugu
sp. (Fugu) : SINFRUT00000129668
ENSDART00000091671
genome : 26,159,116 - 26,182,176 (23,061)
query : 1 - 3,477 (3,477/3,477)
13 exons
identity = 0.998
5'(1.000;1.000;0.935;0.973;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.991)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000091664
genome : 26,159,122 - 26,180,526 (21,405)
query : 1 - 2,955 (2,955/2,955)
17 exons
identity = 0.989
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.956;
0.763;1.000;0.984;0.833;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001340230
Representative transcript
genome : 26,184,879 - 26,188,973 (4,095)
query : 1 - 1,082 (1,082/1,082)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000082302
Pan
sp. (Chimpanzee) : XM_001148164
Pongo
sp. (Orangutan) : ENSPPYT00000010872
Macaca
sp. (Macaque) : ENSMMUT00000004324
Mus
sp. (Mouse) : BC023429
Rattus
sp. (Rat) : BC079167
Canis
sp. (Dog) : XM_850038
Equus
sp. (Horse) : XM_001914807
Bos
sp. (Cow) : BC116031
Monodelphis
sp. (Opossum) : XM_001373101
Takifugu
sp. (Fugu) : SINFRUT00000171249
Zv7_scaffold1081
26151475-26191474 W +