bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
D.rerio
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
AY099536
genome : 2,215,820 - 2,226,578 (10,759)
query : 1 - 1,891 (1,891/1,915)
12 exons
identity = 0.986
3'(0.989;0.969;1.000;0.992;0.983;0.983;0.961;
1.000;0.993;0.972;1.000;0.984)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
NM_173258
genome : 2,215,820 - 2,226,578 (10,759)
query : 1 - 1,891 (1,891/1,915)
12 exons
identity = 0.986
3'(0.989;0.969;1.000;0.992;0.983;0.983;0.961;
1.000;0.993;0.972;1.000;0.984)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
BC044541
Representative transcript
genome : 2,215,820 - 2,226,659 (10,840)
query : 1 - 1,971 (1,971/1,984)
12 exons
identity = 0.994
3'(1.000;0.979;1.000;0.996;0.994;1.000;0.990;
1.000;0.993;0.972;1.000;0.996)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000031654
Pan
sp. (Chimpanzee) : XM_001170187
Pongo
sp. (Orangutan) : ENSPPYT00000008863
Macaca
sp. (Macaque) : AB179265
Mus
sp. (Mouse) : AK033235
Rattus
sp. (Rat) : AY751756
Canis
sp. (Dog) : XM_845552
Equus
sp. (Horse) : XM_001500964
Bos
sp. (Cow) : BC110249
Monodelphis
sp. (Opossum) : XM_001375578
Gallus
sp. (Chicken) : AJ719463
Oryzias
sp. (Medaka) : ENSORLT00000020298
Tetraodon
sp. (Tetraodon) : CR700818
Takifugu
sp. (Fugu) : SINFRUT00000165542
H.sapiens
(Human) : HIT000053422
Pongo
sp. (Orangutan) : ENSPPYT00000004801
Macaca
sp. (Macaque) : AB168741
Mus
sp. (Mouse) : AK050693
Rattus
sp. (Rat) : AF142629
Canis
sp. (Dog) : XM_536532
Equus
sp. (Horse) : XM_001505093
Bos
sp. (Cow) : BC109867
Monodelphis
sp. (Opossum) : XM_001371971
Gallus
sp. (Chicken) : XM_424667
Oryzias
sp. (Medaka) : ENSORLT00000019945
Tetraodon
sp. (Tetraodon) : GSTENT00023358001
Takifugu
sp. (Fugu) : SINFRUT00000131391
ENSDART00000009788
genome : 2,215,809 - 2,226,659 (10,851)
query : 1 - 1,982 (1,982/1,982)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Zv7_scaffold1063
2213239-2229238 W +
TC1DR3
TDR18
TDR7
AT_rich
(TA)n
HAT1_DR
MOSAT_DR
(CAGG)n
(TA)n
MOSAT_DR
MOSAT_DR
(TAGA)n
(CAGA)n
HATN4_DR
TC1DR3
TC1DR3
AT_rich
Tc1-4_DR
LOOPERN4_DR
AT_rich
AT_rich
TDR22
AT_rich
AT_rich
TDR14
HE1_DR1
HATN10_DR
TDR19
TDR14
TDR19
TDR3
TDR14
TDR3
Dr000424
HATN8_DR
HE1_DR1
Dr000953
(CA)n
(TA)n
(TA)n
Dr000515
TDR18