bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
D.rerio
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
BC044549
Representative transcript
genome : 21,217,840 - 21,223,274 (5,435)
query : 1 - 1,711 (1,711/1,727)
12 exons
identity = 0.996
5'(0.998)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000076447
Pan
sp. (Chimpanzee) : ENSPTRT00000002058
Pongo
sp. (Orangutan) : ENSPPYT00000001245
Macaca
sp. (Macaque) : XR_011432
Mus
sp. (Mouse) : AK160173
Mus
sp. (Mouse) : AB081756
Rattus
sp. (Rat) : AY486074
Rattus
sp. (Rat) : ENSRNOT00000040885
Canis
sp. (Dog) : XM_537030
Bos
sp. (Cow) : AB051629
Monodelphis
sp. (Opossum) : XM_001372844
Gallus
sp. (Chicken) : AB071038
Danio
sp. (Zebrafish) : BC153462
Oryzias
sp. (Medaka) : ENSORLT00000013330
Tetraodon
sp. (Tetraodon) : CR655434
Takifugu
sp. (Fugu) : SINFRUT00000157399
H.sapiens
(Human) : HIT000092419
Pan
sp. (Chimpanzee) : XR_021893
Pongo
sp. (Orangutan) : ENSPPYT00000001246
Macaca
sp. (Macaque) : XM_001104487
Equus
sp. (Horse) : ENSECAT00000028859
Monodelphis
sp. (Opossum) : XM_001372804
Gallus
sp. (Chicken) : CR406345
Danio
sp. (Zebrafish) : BC045887
Takifugu
sp. (Fugu) : SINFRUT00000162999
ENSDART00000022268
genome : 21,217,840 - 21,223,290 (5,451)
query : 1 - 1,727 (1,727/1,727)
12 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC065885
genome : 21,217,944 - 21,223,326 (5,383)
query : 10 - 1,748 (1,739/1,774)
11 exons
identity = 1.000
5'(1.000)3'
coverage = 0.995
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
NM_213249
genome : 21,217,944 - 21,223,326 (5,383)
query : 10 - 1,748 (1,739/1,774)
11 exons
identity = 1.000
5'(1.000)3'
coverage = 0.995
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000067817
genome : 21,217,942 - 21,223,327 (5,386)
query : 1 - 1,742 (1,742/1,742)
11 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000103782
genome : 21,217,964 - 21,223,014 (5,051)
query : 1 - 1,428 (1,428/1,428)
11 exons
identity = 0.984
5'(0.980)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC045331
genome : 21,229,198 - 21,232,034 (2,837)
query : 21 - 1,733 (1,713/1,774)
11 exons
identity = 0.992
3'(0.994;1.000;0.983;0.989;0.984;1.000;0.988;
0.982;0.995;1.000;0.977)5'
coverage = 0.988
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
BC065893
Representative transcript
genome : 21,229,198 - 21,232,034 (2,837)
query : 10 - 1,722 (1,713/1,746)
11 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.995
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000218980
Pan
sp. (Chimpanzee) : XM_514111
Pongo
sp. (Orangutan) : ENSPPYT00000000386
Macaca
sp. (Macaque) : ENSMMUT00000045083
Mus
sp. (Mouse) : AY458654
Rattus
sp. (Rat) : DQ286232
Equus
sp. (Horse) : EF694759
Bos
sp. (Cow) : ENSBTAT00000048813
Monodelphis
sp. (Opossum) : XM_001369883
Gallus
sp. (Chicken) : CR407360
Danio
sp. (Zebrafish) : BC046004
Oryzias
sp. (Medaka) : ENSORLT00000013259
Oryzias
sp. (Medaka) : ENSORLT00000017136
Tetraodon
sp. (Tetraodon) : GSTENT00023605001
NM_213213
genome : 21,229,198 - 21,232,034 (2,837)
query : 10 - 1,722 (1,713/1,746)
11 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.995
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000018409
genome : 21,229,194 - 21,232,034 (2,841)
query : 21 - 1,741 (1,721/1,741)
10 exons
identity = 0.991
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.781)5'
coverage = 0.989
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000103771
genome : 21,229,484 - 21,232,499 (3,016)
query : 1 - 1,479 (1,479/1,479)
12 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.937)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000067816
genome : 21,229,487 - 21,232,016 (2,530)
query : 1 - 1,413 (1,413/1,413)
10 exons
identity = 0.996
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.914)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000103770
genome : 21,229,487 - 21,232,016 (2,530)
query : 1 - 1,371 (1,371/1,371)
10 exons
identity = 0.978
3'(0.929;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;0.966;0.862)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Zv7_scaffold1081
21222616-21238615 W +
(CCA)n
AT_rich
A-rich
AT_rich
SINE_DR1
Dr000046
LOOPERN6_DR
LOOPERN6_DR
Dr000235
Dr000235
Dr000267
Dr000235
TDR18
(TAAA)n
(CA)n
AT_rich
HE1_DR1
TDR16
Dr000557
Tc1-4_DR
Tc1-4_DR
HarbingerN7_DR
Dr000491
HarbingerN7_DR
Tc1-4_DR
(TATAA)n
Dr000322
Dr000491
Dr000322
Dr000322
Dr000322