bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
D.rerio
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
NM_001128732
Representative transcript
genome : 28,940,755 - 28,946,196 (5,442)
query : 1 - 1,355 (1,355/1,355)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000025453
Pan
sp. (Chimpanzee) : XM_001156829
Pongo
sp. (Orangutan) : ENSPPYT00000017499
Macaca
sp. (Macaque) : AB168432
Mus
sp. (Mouse) : AK132722
Rattus
sp. (Rat) : XM_001069558
Canis
sp. (Dog) : XM_540952
Equus
sp. (Horse) : ENSECAT00000011257
Bos
sp. (Cow) : BC110266
Monodelphis
sp. (Opossum) : ENSMODT00000015471
Takifugu
sp. (Fugu) : AB183682
H.sapiens
(Human) : HIT000295353_03
Macaca
sp. (Macaque) : XR_011287
Canis
sp. (Dog) : XM_537947
Monodelphis
sp. (Opossum) : XM_001362259
Gallus
sp. (Chicken) : AJ719767
Danio
sp. (Zebrafish) : BC154209
Oryzias
sp. (Medaka) : ENSORLT00000002468
Tetraodon
sp. (Tetraodon) : CR664126
H.sapiens
(Human) : pHIT000031102
ENSDART00000026378
genome : 28,941,117 - 28,946,212 (5,096)
query : 1 - 984 (984/984)
4 exons
identity = 0.975
3'(1.000;0.888)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC055218
Representative transcript
genome : 28,946,938 - 28,956,684 (9,747)
query : 12 - 2,138 (2,127/2,159)
14 exons
identity = 0.986
3'(0.989;0.984;0.979;0.992;0.984;0.994;0.978;
0.982;1.000;1.000;0.979;1.000;0.991;0.921)5'
coverage = 0.994
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000384900_01
Pan
sp. (Chimpanzee) : XM_001137782
Pongo
sp. (Orangutan) : ENSPPYT00000023415
Rattus
sp. (Rat) : L78306
Canis
sp. (Dog) : XM_846562
Monodelphis
sp. (Opossum) : XM_001364206
Gallus
sp. (Chicken) : CR353003
Oryzias
sp. (Medaka) : ENSORLT00000013669
Takifugu
sp. (Fugu) : SINFRUT00000139382
NM_213511
genome : 28,946,938 - 28,956,684 (9,747)
query : 12 - 2,138 (2,127/2,159)
14 exons
identity = 0.986
3'(0.989;0.984;0.979;0.992;0.984;0.994;0.978;
0.982;1.000;1.000;0.979;1.000;0.991;0.921)5'
coverage = 0.994
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000011163
genome : 28,946,933 - 28,956,684 (9,752)
query : 1 - 2,138 (2,138/2,138)
14 exons
identity = 0.998
3'(1.000;1.000;0.966;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000077937
genome : 28,958,014 - 28,960,102 (2,089)
query : 1 - 1,005 (1,005/1,005)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_689767
Representative transcript
genome : 28,959,098 - 28,961,730 (2,633)
query : 1 - 1,092 (1,092/1,092)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000052838_03
Pan
sp. (Chimpanzee) : XM_001175457
Pongo
sp. (Orangutan) : ENSPPYT00000023417
Canis
sp. (Dog) : XM_548831
Monodelphis
sp. (Opossum) : ENSMODT00000000093
Gallus
sp. (Chicken) : AJ720902
Gallus
sp. (Chicken) : ENSGALT00000035979
Tetraodon
sp. (Tetraodon) : GSTENT00025233001
Zv7_scaffold918
28943811-28959810 W +
AT_rich
REX1-1_DR
ASAT_CY
ANGEL
AT_rich
TDR18
HE1_DR1
SINE_DR2
TDR21
TDR21
AT_rich
ASAT_CY
AT_rich
AT_rich
DNA21TA1_DR
TDR3
Harbinger-N10_DR
TDR3
SINE_DR1
AT_rich
Dr000322
Dr000322
TDR14
(T)n
Ngaro1_DR
AT_rich