bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
D.rerio
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001920290
genome : 28,372,394 - 28,398,441 (26,048)
query : 1 - 11,280 (11,280/11,280)
21 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000088963
genome : 28,393,810 - 28,398,312 (4,503)
query : 1 - 2,915 (2,915/2,915)
9 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC139622
Representative transcript
genome : 28,394,458 - 28,398,310 (3,853)
query : 1 - 2,472 (2,472/2,487)
7 exons
identity = 0.991
5'(0.983)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
BC125934
Representative transcript
genome : 28,399,639 - 28,410,973 (11,335)
query : 1 - 2,555 (2,555/2,595)
17 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.993;1.000;
0.961;1.000;1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000042017
Pan
sp. (Chimpanzee) : XM_001174013
Pongo
sp. (Orangutan) : CR861394
Macaca
sp. (Macaque) : AB179358
Mus
sp. (Mouse) : AK146856
Rattus
sp. (Rat) : BC081802
Canis
sp. (Dog) : XM_858389
Equus
sp. (Horse) : ENSECAT00000023332
Bos
sp. (Cow) : BC114761
Monodelphis
sp. (Opossum) : ENSMODT00000025102
Gallus
sp. (Chicken) : M73705
Oryzias
sp. (Medaka) : ENSORLT00000000042
Tetraodon
sp. (Tetraodon) : GSTENT00008340001
Takifugu
sp. (Fugu) : SINFRUT00000166795
H.sapiens
(Human) : HIT000321570
Pan
sp. (Chimpanzee) : XM_001165487
Pongo
sp. (Orangutan) : ENSPPYT00000015696
Macaca
sp. (Macaque) : AB168894
Mus
sp. (Mouse) : AK088723
Rattus
sp. (Rat) : BC079081
Canis
sp. (Dog) : ENSCAFT00000018370
Equus
sp. (Horse) : XM_001502283
Bos
sp. (Cow) : BC103355
Monodelphis
sp. (Opossum) : ENSMODT00000038527
Gallus
sp. (Chicken) : AJ719284
Oryzias
sp. (Medaka) : ENSORLT00000019878
Tetraodon
sp. (Tetraodon) : GSTENT00023828001
Takifugu
sp. (Fugu) : SINFRUT00000131811
ENSDART00000052552
genome : 28,399,639 - 28,410,973 (11,335)
query : 1 - 2,558 (2,558/2,558)
17 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.949;1.000;1.000;1.000;
0.961;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
NM_001045006
genome : 28,399,690 - 28,410,970 (11,281)
query : 1 - 2,495 (2,495/2,495)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000008696
genome : 28,400,344 - 28,410,170 (9,827)
query : 1 - 1,500 (1,500/1,500)
15 exons
identity = 0.980
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.949;1.000;0.968;0.788;1.000;
1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC151963
Representative transcript
genome : 28,410,977 - 28,413,452 (2,476)
query : 1 - 886 (886/908)
3 exons
identity = 0.999
3'(0.998;1.000)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
NM_001103140
genome : 28,410,977 - 28,413,452 (2,476)
query : 1 - 886 (886/908)
3 exons
identity = 0.999
3'(0.998;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
BC154135
genome : 28,410,977 - 28,413,444 (2,468)
query : 1 - 879 (879/896)
3 exons
identity = 0.989
3'(0.985;0.996)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
BC107822
genome : 28,410,977 - 28,413,443 (2,467)
query : 18 - 894 (877/910)
3 exons
identity = 0.998
3'(0.997;1.000)5'
coverage = 0.981
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
NM_001037107
genome : 28,410,977 - 28,413,443 (2,467)
query : 18 - 894 (877/910)
3 exons
identity = 0.998
3'(0.997;1.000)5'
coverage = 0.981
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000077707
genome : 28,410,972 - 28,413,445 (2,474)
query : 1 - 884 (884/884)
3 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Zv7_scaffold361
28397306-28413305 W +
HarbingerN6_DR
TC1DR3
AT_rich
Looper-N8_DR
HarbingerN7_DR
HarbingerN7_DR
Dr001101
Dr001139
(TA)n
(CCTA)n
(TTCA)n
SINE_DR1
(TTCA)n
Dr000134
(CA)n
Dr000460
Dr001048
AT_rich
AT_rich
AT_rich
ANGEL
AT_rich
ANGEL