bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
D.rerio
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
BC042321
Representative transcript
genome : 52,935,441 - 52,941,286 (5,846)
query : 1 - 579 (579/597)
3 exons
identity = 0.981
3'(0.976;0.993)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
NM_131257
genome : 52,935,441 - 52,941,286 (5,846)
query : 1 - 579 (579/597)
3 exons
identity = 0.981
3'(0.976;0.993)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
BC116464
genome : 52,940,467 - 52,941,286 (820)
query : 1 - 579 (579/596)
3 exons
identity = 0.997
3'(1.000;0.993)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000053078
genome : 52,940,465 - 52,941,286 (822)
query : 1 - 581 (581/581)
3 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
NM_001013027
Representative transcript
genome : 52,942,126 - 52,942,941 (816)
query : 1 - 617 (617/617)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000037174
Pan
sp. (Chimpanzee) : ENSPTRT00000006185
Pongo
sp. (Orangutan) : ENSPPYT00000004268
Macaca
sp. (Macaque) : ENSMMUT00000033374
Mus
sp. (Mouse) : AK012897
Rattus
sp. (Rat) : NM_001008890
Canis
sp. (Dog) : AB218658
Equus
sp. (Horse) : ENSECAT00000012801
Bos
sp. (Cow) : DQ277007
Monodelphis
sp. (Opossum) : ENSMODT00000014426
Gallus
sp. (Chicken) : J00861
Danio
sp. (Zebrafish) : AY329628
Oryzias
sp. (Medaka) : ENSORLT00000006621
Tetraodon
sp. (Tetraodon) : CR634037
Takifugu
sp. (Fugu) : SINFRUT00000128048
ENSDART00000101713
genome : 52,942,129 - 52,942,941 (813)
query : 1 - 614 (614/614)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC091534
Representative transcript
genome : 52,947,000 - 52,947,813 (814)
query : 2 - 553 (552/573)
3 exons
identity = 0.961
3'(0.954;0.976;0.947)5'
coverage = 0.998
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000273650
Pongo
sp. (Orangutan) : CR859361
Macaca
sp. (Macaque) : XM_001094404
Mus
sp. (Mouse) : AK010422
Rattus
sp. (Rat) : M17083
Bos
sp. (Cow) : BC102940
Monodelphis
sp. (Opossum) : ENSMODT00000021124
Gallus
sp. (Chicken) : J00851
Oryzias
sp. (Medaka) : AB026052
Tetraodon
sp. (Tetraodon) : CR684733
Takifugu
sp. (Fugu) : SINFRUT00000147718
NM_001013461
genome : 52,947,000 - 52,947,813 (814)
query : 2 - 553 (552/573)
3 exons
identity = 0.961
3'(0.954;0.976;0.947)5'
coverage = 0.998
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000101709
genome : 52,946,999 - 52,947,813 (815)
query : 1 - 560 (560/560)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001918465
genome : 52,946,999 - 52,947,813 (815)
query : 1 - 560 (560/560)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000022631
Representative transcript
genome : 52,947,529 - 52,950,172 (2,644)
query : 1 - 402 (402/402)
3 exons
identity = 0.975
5'(1.000;0.942;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001918414
genome : 52,949,453 - 52,950,152 (700)
query : 1 - 528 (528/528)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000053077
genome : 52,949,482 - 52,950,097 (616)
query : 1 - 444 (444/444)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Zv7_scaffold283
52940850-52956849 W +
AT_rich
(TTA)n
AT_rich
DNA-2-3_DR
HE1_DR1
Dr000508
DNA-2-3_DR
(TAA)n
AT_rich
AT_rich
(TG)n
Dr000322
TDR23
AT_rich
Dr000714
HATN8_DR
Dr001076
(TTA)n
T-rich
SINE_DR1
(TTA)n
TDR8