bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
C.familiaris
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_846533
Representative transcript
genome : 857,507 - 877,460 (19,954)
query : 1 - 1,920 (1,920/1,920)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000051392_03
Pongo
sp. (Orangutan) : ENSPPYT00000023413
Mus
sp. (Mouse) : M85078
Bos
sp. (Cow) : XM_589264
ENSCAFT00000017576
genome : 863,616 - 877,460 (13,845)
query : 1 - 1,170 (1,170/1,170)
9 exons
identity = 0.980
5'(1.000;1.000;1.000;0.845;1.000;1.000;0.962;
1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_537947
Representative transcript
genome : 878,975 - 887,144 (8,170)
query : 1 - 1,825 (1,825/1,825)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000295353_03
Macaca
sp. (Macaque) : XR_011287
Monodelphis
sp. (Opossum) : XM_001362259
Gallus
sp. (Chicken) : AJ719767
Danio
sp. (Zebrafish) : BC154209
Danio
sp. (Zebrafish) : NM_001128732
Oryzias
sp. (Medaka) : ENSORLT00000002468
Tetraodon
sp. (Tetraodon) : CR664126
ENSCAFT00000017551
genome : 879,207 - 883,673 (4,467)
query : 37 - 1,158 (1,122/1,158)
5 exons
identity = 0.992
3'(1.000;1.000;1.000;1.000;0.845)5'
coverage = 0.969
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_846562
Representative transcript
genome : 887,463 - 976,031 (88,569)
query : 1 - 2,229 (2,229/2,229)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000384900_01
Pan
sp. (Chimpanzee) : XM_001137782
Pongo
sp. (Orangutan) : ENSPPYT00000023415
Rattus
sp. (Rat) : L78306
Monodelphis
sp. (Opossum) : XM_001364206
Gallus
sp. (Chicken) : CR353003
Danio
sp. (Zebrafish) : BC055218
Oryzias
sp. (Medaka) : ENSORLT00000013669
Takifugu
sp. (Fugu) : SINFRUT00000139382
ENSCAFT00000024283
genome : 887,508 - 904,029 (16,522)
query : 1 - 1,739 (1,739/1,755)
12 exons
identity = 0.987
3'(0.883;0.966;1.000;0.980;0.993;0.989;1.000;
1.000;1.000;1.000;0.958;1.000)5'
coverage = 0.991
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000038057
Representative transcript
genome : 978,852 - 979,596 (745)
query : 1 - 375 (375/375)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
contig_25790
851747-859912 W -
671
859913-860583 N
contig_25789
860584-896597 W -
398
896598-896995 N
contig_25788
896996-900044 W -
1790
900045-901834 N
contig_25787
901835-904913 W -
70878
904914-975791 N
contig_25786
975792-977754 W -
227
977755-977981 N
contig_25785
977982-1011746 W -