bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
C.familiaris
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_542203
Representative transcript
genome : 60,576,082 - 60,582,966 (6,885)
query : 1 - 869 (869/869)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000302135
Pan
sp. (Chimpanzee) : XM_001172605
Pongo
sp. (Orangutan) : ENSPPYT00000010868
Macaca
sp. (Macaque) : XM_001117362
Mus
sp. (Mouse) : AK140688
Rattus
sp. (Rat) : J03588
Equus
sp. (Horse) : ENSECAT00000009900
Bos
sp. (Cow) : BC109825
Monodelphis
sp. (Opossum) : ENSMODT00000033775
Gallus
sp. (Chicken) : XM_001234062
Danio
sp. (Zebrafish) : BC107607
Oryzias
sp. (Medaka) : ENSORLT00000010343
Tetraodon
sp. (Tetraodon) : CR727851
Takifugu
sp. (Fugu) : SINFRUT00000157734
ENSCAFT00000031001
genome : 60,581,262 - 60,582,972 (1,711)
query : 1 - 734 (734/752)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.976
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_533960
Representative transcript
genome : 60,583,654 - 60,589,209 (5,556)
query : 1 - 752 (752/752)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000330518
Pan
sp. (Chimpanzee) : ENSPTRT00000018721
Pongo
sp. (Orangutan) : CR861249
Macaca
sp. (Macaque) : XM_001117356
Mus
sp. (Mouse) : AK003132
Rattus
sp. (Rat) : BC086574
Equus
sp. (Horse) : XM_001503789
Bos
sp. (Cow) : BC109716
Monodelphis
sp. (Opossum) : XM_001373213
Gallus
sp. (Chicken) : XM_001234053
Danio
sp. (Zebrafish) : BC056291
Oryzias
sp. (Medaka) : ENSORLT00000010328
Tetraodon
sp. (Tetraodon) : CR661219
Takifugu
sp. (Fugu) : SINFRUT00000157736
ENSCAFT00000035335
genome : 60,583,655 - 60,588,844 (5,190)
query : 1 - 740 (740/740)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000031041
genome : 60,583,685 - 60,589,215 (5,531)
query : 1 - 727 (727/727)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000035334
genome : 60,585,365 - 60,587,866 (2,502)
query : 1 - 537 (537/537)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000031046
Representative transcript
genome : 60,592,690 - 60,609,001 (16,312)
query : 1 - 2,269 (2,269/2,269)
13 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000502568
Pan
sp. (Chimpanzee) : XM_512235
Macaca
sp. (Macaque) : XM_001094391
Mus
sp. (Mouse) : AK158750
Rattus
sp. (Rat) : XM_343166
Equus
sp. (Horse) : ENSECAT00000024559
Bos
sp. (Cow) : BC123693
Monodelphis
sp. (Opossum) : XM_001373230
Gallus
sp. (Chicken) : BX933853
XM_850063
genome : 60,594,341 - 60,609,076 (14,736)
query : 1 - 2,106 (2,106/2,106)
13 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
contig_20763
60578431-60580328 W -
469
60580329-60580797 N
contig_20762
60580798-60594430 W -
SINEC_Cf
AT_rich
SINEC_Cf2
SINEC_a2
SINEC_old
MER58B
SINEC_Cf
MIRb
(CCCCG)n
L1MB7
SINEC_Cf
L1MB7
C-rich
GC_rich
tRNA-Asn-AAC
GC_rich
GC_rich
tRNA-Phe-TTY
MLT1F1
SINEC_b2
L1MB3
GC_rich
GC_rich