bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
C.familiaris
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_532760
genome : 18,053,670 - 18,061,384 (7,715)
query : 1 - 996 (996/996)
13 exons
identity = 0.989
3'(0.896;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_532761
Representative transcript
genome : 18,059,411 - 18,075,087 (15,677)
query : 1 - 3,880 (3,880/3,880)
23 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.881)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000329093
Pan
sp. (Chimpanzee) : XR_022958
Pongo
sp. (Orangutan) : CR858074
Macaca
sp. (Macaque) : XM_001103478
Mus
sp. (Mouse) : AK145930
Rattus
sp. (Rat) : J05166
Equus
sp. (Horse) : AY457176
Bos
sp. (Cow) : AF176109
Monodelphis
sp. (Opossum) : ENSMODT00000005326
Danio
sp. (Zebrafish) : DQ287972
Oryzias
sp. (Medaka) : ENSORLT00000008673
Oryzias
sp. (Medaka) : ENSORLT00000015230
Tetraodon
sp. (Tetraodon) : GSTENT00031825001
Takifugu
sp. (Fugu) : SINFRUT00000167732
ENSCAFT00000007465
genome : 18,061,101 - 18,074,517 (13,417)
query : 1 - 3,648 (3,648/3,648)
21 exons
identity = 0.995
5'(0.817;0.988;1.000;1.000;1.000;1.000;0.968;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000007485
genome : 18,063,552 - 18,074,517 (10,966)
query : 9 - 3,612 (3,604/3,612)
20 exons
identity = 0.997
5'(0.973;1.000;1.000;1.000;1.000;0.968;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000007633
genome : 18,075,067 - 18,079,206 (4,140)
query : 1 - 1,751 (1,751/1,751)
10 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
NM_001033511
Representative transcript
genome : 18,075,072 - 18,079,266 (4,195)
query : 1 - 1,806 (1,806/1,806)
10 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000299394
Pan
sp. (Chimpanzee) : XM_528000
Pongo
sp. (Orangutan) : CR857344
Macaca
sp. (Macaque) : AB169891
Mus
sp. (Mouse) : AK164317
Rattus
sp. (Rat) : BC083715
Equus
sp. (Horse) : XM_001504656
Bos
sp. (Cow) : BC113257
Gallus
sp. (Chicken) : XM_424265
Danio
sp. (Zebrafish) : XR_029820
Tetraodon
sp. (Tetraodon) : GSTENT00004492001
Takifugu
sp. (Fugu) : SINFRUT00000171831
XM_855518
genome : 18,075,072 - 18,079,249 (4,178)
query : 1 - 1,708 (1,708/1,708)
10 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_855548
genome : 18,075,168 - 18,079,252 (4,085)
query : 1 - 1,468 (1,468/1,468)
8 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_855448
genome : 18,075,168 - 18,079,225 (4,058)
query : 1 - 1,397 (1,397/1,397)
10 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000007635
genome : 18,075,168 - 18,079,206 (4,039)
query : 1 - 1,227 (1,227/1,227)
9 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_855486
genome : 18,075,168 - 18,079,206 (4,039)
query : 1 - 1,227 (1,227/1,227)
9 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000007624
genome : 18,075,168 - 18,078,326 (3,159)
query : 1 - 1,338 (1,338/1,338)
7 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
contig_35582
18059249-18074590 W +
249
18074591-18074839 N
contig_35583
18074840-18075248 W +
GC_rich
G-rich
(TGGGGG)n
(GGGGA)n
GC_rich
(TG)n
MIRb
L2
MER91
SINEC_a2
L1ME3
SINEC_a1
L1ME3
(CGTG)n
(TTTA)n
SINEC_a2
MIRb
(TTTC)n
SINEC_old
C-rich
SINEC_c2