bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
C.familiaris
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSCAFT00000036929
Representative transcript
genome : 43,269,588 - 43,277,256 (7,669)
query : 1 - 1,416 (1,416/1,416)
17 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000063204
Pan
sp. (Chimpanzee) : XR_025177
Pongo
sp. (Orangutan) : ENSPPYT00000008144
Macaca
sp. (Macaque) : XM_001083719
Mus
sp. (Mouse) : AK080707
Rattus
sp. (Rat) : U32438
Equus
sp. (Horse) : ENSECAT00000026747
Bos
sp. (Cow) : BC118186
Monodelphis
sp. (Opossum) : XM_001372334
Gallus
sp. (Chicken) : XM_001231807
Danio
sp. (Zebrafish) : BC154045
Oryzias
sp. (Medaka) : ENSORLT00000012210
Tetraodon
sp. (Tetraodon) : CR691802
Takifugu
sp. (Fugu) : SINFRUT00000140926
XM_849226
genome : 43,269,614 - 43,277,256 (7,643)
query : 1 - 1,276 (1,276/1,276)
16 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000036925
genome : 43,269,874 - 43,277,256 (7,383)
query : 1 - 1,158 (1,158/1,158)
12 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_547221
Representative transcript
genome : 43,277,738 - 43,288,786 (11,049)
query : 1 - 2,142 (2,142/2,142)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000025138
Pan
sp. (Chimpanzee) : XM_510705
Pongo
sp. (Orangutan) : ENSPPYT00000008143
Macaca
sp. (Macaque) : XM_001083832
Mus
sp. (Mouse) : AK158049
Rattus
sp. (Rat) : BC088404
Equus
sp. (Horse) : XM_001496735
Bos
sp. (Cow) : BC105518
Monodelphis
sp. (Opossum) : ENSMODT00000021147
Takifugu
sp. (Fugu) : SINFRUT00000141643
ENSCAFT00000031302
genome : 43,278,811 - 43,288,789 (9,979)
query : 1 - 1,715 (1,715/1,715)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
contig_26853
43275262-43276226 W -
235
43276227-43276461 N
contig_26852
43276462-43291261 W -
(C)n
SINEC_Cf
AT_rich
GC_rich
L1M4
SINEC_c2
L1MB3
L1MB3
L1M5
SINEC_Cf3
L1M2
SINEC_c2
L1MB8
SINEC_c1
L1_Carn3
SINEC_b1
L1_Carn3
L1MB7
SINEC_a1
MIRb
SINEC_c2
L1MB8
SINEC_Cf
L1MB4