bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
C.familiaris
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSCAFT00000009865
genome : 39,228,341 - 39,329,829 (101,489)
query : 1 - 2,784 (2,784/2,784)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000009858
genome : 39,238,818 - 39,329,829 (91,012)
query : 1 - 2,796 (2,796/2,796)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000009870
genome : 39,243,790 - 39,329,829 (86,040)
query : 1 - 2,808 (2,808/2,808)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000009862
genome : 39,243,793 - 39,329,829 (86,037)
query : 1 - 2,811 (2,811/2,811)
5 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000009877
genome : 39,252,422 - 39,329,829 (77,408)
query : 1 - 2,805 (2,805/2,805)
5 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_852734
genome : 39,300,874 - 39,329,874 (29,001)
query : 1 - 558 (558/558)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_852810
genome : 39,300,982 - 39,329,973 (28,992)
query : 1 - 2,949 (2,949/2,949)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000036512
genome : 39,300,982 - 39,329,829 (28,848)
query : 1 - 2,805 (2,805/2,805)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000009880
genome : 39,307,688 - 39,329,829 (22,142)
query : 1 - 2,826 (2,826/2,826)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_535217
genome : 39,311,731 - 39,329,874 (18,144)
query : 1 - 2,880 (2,880/2,880)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000009881
genome : 39,311,731 - 39,329,829 (18,099)
query : 1 - 2,835 (2,835/2,835)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000009962
Representative transcript
genome : 39,335,272 - 39,431,006 (95,735)
query : 24 - 3,915 (3,892/3,915)
27 exons
identity = 0.993
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.949;1.000;1.000;0.952;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.994
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000329417
Pan
sp. (Chimpanzee) : XR_023032
Pongo
sp. (Orangutan) : ENSPPYT00000018486
Mus
sp. (Mouse) : BC070412
Rattus
sp. (Rat) : XM_001065947
Equus
sp. (Horse) : XM_001502063
Bos
sp. (Cow) : XR_028406
Monodelphis
sp. (Opossum) : XM_001377955
Gallus
sp. (Chicken) : AB025226
Danio
sp. (Zebrafish) : BC078320
Oryzias
sp. (Medaka) : ENSORLT00000005174
Takifugu
sp. (Fugu) : SINFRUT00000182265
XM_535219
Representative transcript
genome : 39,432,823 - 39,447,357 (14,535)
query : 1 - 2,006 (2,006/2,006)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000029776
Pan
sp. (Chimpanzee) : XM_001151110
Pongo
sp. (Orangutan) : CR858777
Macaca
sp. (Macaque) : XM_001093955
Macaca
sp. (Macaque) : XM_001091458
Mus
sp. (Mouse) : AK145158
Rattus
sp. (Rat) : AF321131
Equus
sp. (Horse) : XM_001503978
Bos
sp. (Cow) : BC111247
Monodelphis
sp. (Opossum) : XM_001368787
Gallus
sp. (Chicken) : AF039753
Danio
sp. (Zebrafish) : BC044543
Oryzias
sp. (Medaka) : ENSORLT00000011295
Tetraodon
sp. (Tetraodon) : CR692507
Takifugu
sp. (Fugu) : SINFRUT00000133251
XM_853060
genome : 39,432,823 - 39,447,349 (14,527)
query : 1 - 1,855 (1,855/1,855)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_853020
genome : 39,432,823 - 39,447,347 (14,525)
query : 1 - 1,771 (1,771/1,771)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_852979
genome : 39,432,823 - 39,438,958 (6,136)
query : 1 - 1,206 (1,206/1,206)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000009998
genome : 39,432,911 - 39,447,310 (14,400)
query : 1 - 1,504 (1,504/1,504)
16 exons
identity = 0.993
3'(1.000;0.914;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000035162
genome : 39,432,913 - 39,447,310 (14,398)
query : 1 - 1,869 (1,869/1,869)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_852894
genome : 39,438,932 - 39,447,332 (8,401)
query : 1 - 600 (600/600)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_852850
genome : 39,439,356 - 39,447,347 (7,992)
query : 1 - 793 (793/793)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_853140
Representative transcript
genome : 39,448,089 - 39,451,642 (3,554)
query : 1 - 1,595 (1,595/1,595)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000082099
Pan
sp. (Chimpanzee) : XM_530851
Pongo
sp. (Orangutan) : ENSPPYT00000018488
Macaca
sp. (Macaque) : ENSMMUT00000017649
Mus
sp. (Mouse) : AK044097
Rattus
sp. (Rat) : BC089946
Equus
sp. (Horse) : ENSECAT00000021347
Bos
sp. (Cow) : BC112736
Monodelphis
sp. (Opossum) : XM_001377986
Gallus
sp. (Chicken) : CR353410
Danio
sp. (Zebrafish) : BC115295
Tetraodon
sp. (Tetraodon) : GSTENT00013829001
XM_535220
genome : 39,448,188 - 39,451,642 (3,455)
query : 1 - 1,480 (1,480/1,480)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000010006
genome : 39,448,777 - 39,635,041 (186,265)
query : 1 - 909 (909/909)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000010029
Representative transcript
genome : 39,452,088 - 39,461,863 (9,776)
query : 1 - 2,130 (2,130/2,130)
20 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.970;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000085322
Pan
sp. (Chimpanzee) : XM_517998
Pongo
sp. (Orangutan) : CR860213
Macaca
sp. (Macaque) : XM_001089589
Mus
sp. (Mouse) : AK154732
Rattus
sp. (Rat) : XM_001066113
Equus
sp. (Horse) : XM_001917745
Bos
sp. (Cow) : ENSBTAT00000021194
Monodelphis
sp. (Opossum) : ENSMODT00000013508
Gallus
sp. (Chicken) : XM_425188
Oryzias
sp. (Medaka) : ENSORLT00000013461
Tetraodon
sp. (Tetraodon) : GSTENT00005747001
Takifugu
sp. (Fugu) : SINFRUT00000153124
XM_544315
genome : 39,452,088 - 39,461,583 (9,496)
query : 13 - 2,079 (2,067/2,079)
19 exons
identity = 0.996
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.970;1.000;
1.000;1.000;1.000;1.000;0.963)5'
coverage = 0.994
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
contig_23208
39303139-39346032 W +
153
39346033-39346185 N
contig_23209
39346186-39463138 W +