bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
B.taurus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSBTAT00000005330
genome : 117,809,157 - 117,968,268 (159,112)
query : 1 - 2,304 (2,304/2,304)
10 exons
identity = 0.996
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001255977
Representative transcript
genome : 117,902,653 - 117,907,425 (4,773)
query : 1 - 2,015 (2,015/2,015)
13 exons
identity = 0.998
5'(1.000;0.995;0.994;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSBTAT00000010209
genome : 117,903,455 - 117,907,425 (3,971)
query : 1 - 1,709 (1,709/1,709)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC120083
Representative transcript
genome : 117,908,548 - 117,912,901 (4,354)
query : 3 - 1,153 (1,151/1,169)
12 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;0.987;1.000;
1.000;1.000;0.985;1.000;1.000)5'
coverage = 0.997
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000032219
Pan
sp. (Chimpanzee) : XM_519523
Pongo
sp. (Orangutan) : ENSPPYT00000021193
Macaca
sp. (Macaque) : AB173664
Mus
sp. (Mouse) : AK051790
Rattus
sp. (Rat) : L02121
Canis
sp. (Dog) : ENSCAFT00000007612
Equus
sp. (Horse) : XM_001504654
Monodelphis
sp. (Opossum) : XM_001363691
Danio
sp. (Zebrafish) : AF203736
Oryzias
sp. (Medaka) : ENSORLT00000021948
Tetraodon
sp. (Tetraodon) : GSTENT00016158001
Takifugu
sp. (Fugu) : SINFRUT00000156867
ENSBTAT00000010212
genome : 117,908,548 - 117,912,901 (4,354)
query : 1 - 1,157 (1,157/1,157)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
NM_174017
genome : 117,908,552 - 117,912,858 (4,307)
query : 1 - 1,100 (1,100/1,100)
12 exons
identity = 0.996
3'(0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.976)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
X82440
genome : 117,908,552 - 117,912,858 (4,307)
query : 1 - 1,100 (1,100/1,100)
12 exons
identity = 0.996
3'(0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.976)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
L04798
genome : 117,908,695 - 117,912,872 (4,178)
query : 1 - 971 (971/971)
12 exons
identity = 0.995
3'(0.983;1.000;1.000;1.000;0.990;1.000;1.000;
1.000;1.000;1.000;1.000;0.980)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
AAFC03082587
117902724-117913452 W +
277
117913453-117913729 N
AAFC03082582
117913730-117916166 W -
AAFC03107447
117916167-117918621 W +
50
117918622-117918671 N
AAFC03107443
117918672-117918723 W -
GC_rich
Bov-tA2
Bov-tA2
C-rich
GC_rich
(CCCCG)n
L2b
ART2A
BOV-A2
L2a
(GGGTG)n
GC_rich
G-rich
GC_rich
GC_rich