*--------------------------------------------------------------------------------------------------* Release information of H-InvDB_8.3 http://www.h-invitational.jp Dataset fixed on July 30, 2011. Released on March 26, 2013. (Erratum released on July 29, 2013.) *--------------------------------------------------------------------------------------------------* --------------------------- H-InvDB statistics --------------------------- 1. number of H-Invitational transcripts (HIT) all HIT: 249,012 * protein coding transcripts: 227,437 * non-protein-coding transcripts: 20,411 * psudogene candidates: 1,164 2. number of H-Invitational clusters (HIX) all HIX: 45,847 * protein coding: 36,789 * non-protein-coding: 8,366 * psudogene candidates: 692 3. number of H-Invitational proteins (HIP) all HIP: 152,151 --------------------------- Human nucleotide datasets --------------------------- 1. Human full-length cDNA dataset The dataset contains sequences produced by six institutes. All the sequences are already in DDBJ/EMBL/GenBank. 2. Human mRNA dataset Human mRNA sequences registered in DDBJ/EMBL/GenBank other than full-length cDNA were extracted from DDBJ release 86 obtained on July 30, 2011. 3. Human genome dataset Repeat masked human genome assembly NCBI build 37.1 was obtained from UCSC. (GRCh37: UCSC hg19, Feb. 2009: human genome NCBI b37.1) --------------------------- Databases --------------------------- 1. RefSeq mRNA RefSeq curated mRNAs were obtained from NCBI on July 30, 2011. (RefSeq release 47) 2. Ensembl transcripts Ensembl transcripts were obtained from Ensembl on July 30, 2011. Ensembl [release 63] 2. RefSeq protein RefSeq proteins were obtained from NCBI on July 30, 2011. (RefSeq release 47) 3. UniProt(SWISS-PROT/TrEMBL) UniProt(SWISS-PROT/TrEMBL) entries were obtained from EBI on July 30, 2011. (Release 2011_07) 4. HUGO approved gene symbol http://www.gene.ucl.ac.uk/nomenclature/ Human gene name data fixed on July 30, 2011. 5. Entrez Gene database http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene Relations of H-InvDB genes to Entrez Genes were fixed on July 30, 2011. 6. dbSNP Relations of H-InvDB genes to dbSNP build132 were fixed on July 30, 2011. *--------------------------------------------------------------------------------------------------*