H-InvDB_9.0 released on May 27, 2015.
Search by
Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
SCOP ID
UniProt
for
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Please select "dataset" and input query terms in alphanumeric characters.
Search contents
Dataset
All H-Inv transcripts
Representative H-Inv transcripts
Representative alternative splicing variants (RASV)
operated by:
AND
OR
1. Keyword or ID
2. Gene structures
3. Alternative splicing (AS) variants
4. Non-coding functional RNAs
5. Protein functions
6. Functional domains
7. Subcellular localization
8. Metabolic pathways
9. Protein 3D structures
10. Genetic polymorphisms
11. Gene expression
12. Relation with diseases
13. Molecular evolution
14. Protein-protein interactions
15. Gene families/groups
16. Transcript info.
1. Keyword or ID
Select a search item in pull-down menu. (* for keywords and the others for IDs) [
more
]
Keyword*
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
SCOP ID
UniProt ID
*for keywords and the others for IDs
for
Keyword::
File upload::
2. Gene structures
Search for the mapping information onto the human genome; chromosome number, location, strand, chromosome band. [
more
]
example:
Chromosome number
1
2
3
4
4_ctg9_hap1
5
6
6_apd_hap1
6_cox_hap2
6_dbb_hap3
6_mann_hap4
6_mcf_hap5
6_qbl_hap6
6_ssto_hap7
7
8
9
10
11
12
13
14
15
16
17
17_ctg5_hap1
18
19
20
21
22
X
Y
M
UM
1_191_random
1_192_random
4_193_random
4_194_random
7_195_random
9_201_random
17_204_random
17_205_random
19_209_random
Un_211
Un_212
Un_213
Un_214
Un_215
Un_218
Un_219
Un_220
Un_221
Un_222
Un_223
Un_224
Un_228
Un_229
Un_237
Un_238
Un_241
Un_242
Un_243
Un_249
Chromosome band
1p11.2
1p11.2-1p12
1p12
1p13.1
1p13.1-1p13.2
1p13.2
1p13.3
1p21.1
1p21.2
1p21.3
1p21.3-1p22.1
1p22.1
1p22.1-1p22.2
1p22.2
1p22.3
1p22.3-1p31.1
1p31.1
1p31.2
1p31.2-1p31.3
1p31.3
1p32.1
1p32.1-1p32.2
1p32.2
1p32.2-1p32.3
1p32.3
1p33
1p33-1p34.1
1p34.1
1p34.2
1p34.2-1p34.3
1p34.3
1p34.3-1p35.1
1p35.1
1p35.1-1p35.2
1p35.2
1p35.3
1p35.3-1p36.11
1p36.11
1p36.12
1p36.12-1p36.13
1p36.13
1p36.13-1p36.21
1p36.21
1p36.22
1p36.23
1p36.23-1p36.31
1p36.31
1p36.32
1p36.32-1p36.33
1p36.33
1q12
1q21.1
1q21.2
1q21.2-1q21.3
1q21.3
1q21.3-1q22
1q22
1q22-1q23.1
1q23.1
1q23.1-1q23.2
1q23.2
1q23.2-1q23.3
1q23.3
1q23.3-1q24.1
1q24.1
1q24.1-1q24.2
1q24.2
1q24.3
1q24.3-1q25.1
1q25.1
1q25.1-1q25.2
1q25.2
1q25.2-1q25.3
1q25.3
1q25.3-1q31.1
1q31.1
1q31.2
1q31.3
1q31.3-1q32.1
1q32.1
1q32.1-1q32.2
1q32.2
1q32.2-1q32.3
1q32.3
1q32.3-1q41
1q41
1q41-1q42.11
1q42.11
1q42.11-1q42.12
1q42.12
1q42.13
1q42.2
1q42.2-1q42.3
1q42.3
1q42.3-1q43
1q43
1q43-1q44
1q44
2p11.1
2p11.2
2p12
2p13.1
2p13.1-2p13.2
2p13.2
2p13.3
2p13.3-2p14
2p14
2p14-2p15
2p15
2p15-2p16.1
2p16.1
2p16.1-2p16.2
2p16.2
2p16.3
2p16.3-2p21
2p21
2p22.1
2p22.1-2p22.2
2p22.2
2p22.2-2p22.3
2p22.3
2p22.3-2p23.1
2p23.1
2p23.1-2p23.2
2p23.2
2p23.2-2p23.3
2p23.3
2p23.3-2p24.1
2p24.1
2p24.1-2p24.2
2p24.2
2p24.3
2p24.3-2p25.1
2p25.1
2p25.1-2p25.2
2p25.2
2p25.3
2q11.1
2q11.1-2q11.2
2q11.2
2q11.2-2q12.1
2q12.1
2q12.1-2q12.2
2q12.2
2q12.2-2q12.3
2q12.3
2q12.3-2q13
2q13
2q13-2q14.1
2q14.1
2q14.2
2q14.2-2q14.3
2q14.3
2q21.1
2q21.1-2q21.2
2q21.2
2q21.2-2q21.3
2q21.3
2q22.1
2q22.1-2q22.2
2q22.2
2q22.2-2q22.3
2q22.3
2q22.3-2q23.1
2q23.1
2q23.1-2q23.2
2q23.2
2q23.2-2q23.3
2q23.3
2q23.3-2q24.1
2q24.1
2q24.2
2q24.3
2q24.3-2q31.1
2q31.1
2q31.1-2q31.2
2q31.2
2q31.2-2q31.3
2q31.3
2q32.1
2q32.1-2q32.2
2q32.2
2q32.2-2q32.3
2q32.3
2q32.3-2q33.1
2q33.1
2q33.1-2q33.2
2q33.2
2q33.2-2q33.3
2q33.3
2q34
2q34-2q35
2q35
2q35-2q36.1
2q36.1
2q36.2
2q36.3
2q36.3-2q37.1
2q37.1
2q37.2
2q37.2-2q37.3
2q37.3
3p11.1
3p11.2
3p12.1
3p12.2
3p12.2-3p12.3
3p12.3
3p13
3p13-3p14.1
3p14.1
3p14.2
3p14.2-3p14.3
3p14.3
3p14.3-3p21.1
3p21.1
3p21.1-3p21.2
3p21.2
3p21.2-3p21.31
3p21.31
3p21.32
3p21.33
3p21.33-3p22.1
3p22.1
3p22.1-3p22.2
3p22.2
3p22.2-3p22.3
3p22.3
3p23
3p23-3p24.1
3p24.1
3p24.2
3p24.2-3p24.3
3p24.3
3p24.3-3p25.1
3p25.1
3p25.1-3p25.2
3p25.2
3p25.3
3p25.3-3p26.1
3p26.1
3p26.1-3p26.2
3p26.2
3p26.2-3p26.3
3p26.3
3q11.1
3q11.2
3q11.2-3q12.1
3q12.1
3q12.1-3q12.2
3q12.2
3q12.3
3q13.11
3q13.12
3q13.12-3q13.13
3q13.13
3q13.13-3q13.2
3q13.2
3q13.2-3q13.31
3q13.31
3q13.32
3q13.33
3q21.1
3q21.1-3q21.2
3q21.2
3q21.2-3q21.3
3q21.3
3q21.3-3q22.1
3q22.1
3q22.1-3q22.2
3q22.2
3q22.2-3q22.3
3q22.3
3q22.3-3q23
3q23
3q24
3q24-3q25.1
3q25.1
3q25.1-3q25.2
3q25.2
3q25.31
3q25.31-3q25.32
3q25.32
3q25.32-3q25.33
3q25.33
3q25.33-3q26.1
3q26.1
3q26.2
3q26.2-3q26.31
3q26.31
3q26.32
3q26.33
3q27.1
3q27.2
3q27.2-3q27.3
3q27.3
3q27.3-3q28
3q28
3q28-3q29
3q29
4p11
4p11-4p12
4p12
4p13
4p13-4p14
4p14
4p15.1
4p15.2
4p15.2-4p15.31
4p15.31
4p15.32
4p15.33
4p16.1
4p16.2
4p16.2-4p16.3
4p16.3
4q12
4q13.1
4q13.2
4q13.2-4q13.3
4q13.3
4q21.1
4q21.21
4q21.22
4q21.23
4q21.23-4q21.3
4q21.3
4q21.3-4q22.1
4q22.1
4q22.1-4q22.2
4q22.2
4q22.2-4q22.3
4q22.3
4q22.3-4q23
4q23
4q24
4q25
4q25-4q26
4q26
4q27
4q27-4q28.1
4q28.1
4q28.2
4q28.3
4q31.1
4q31.1-4q31.21
4q31.21
4q31.21-4q31.22
4q31.22
4q31.22-4q31.23
4q31.23
4q31.23-4q31.3
4q31.3
4q31.3-4q32.1
4q32.1
4q32.2
4q32.2-4q32.3
4q32.3
4q32.3-4q33
4q33
4q34.1
4q34.2
4q34.3
4q34.3-4q35.1
4q35.1
4q35.2
5p12
5p12-5p13.1
5p13.1
5p13.1-5p13.2
5p13.2
5p13.2-5p13.3
5p13.3
5p14.1
5p14.1-5p14.2
5p14.2
5p14.3
5p15.1
5p15.2
5p15.2-5p15.31
5p15.31
5p15.31-5p15.32
5p15.32
5p15.32-5p15.33
5p15.33
5q11.1
5q11.2
5q11.2-5q12.1
5q12.1
5q12.3
5q13.1
5q13.1-5q13.2
5q13.2
5q13.3
5q14.1
5q14.1-5q14.2
5q14.2
5q14.2-5q14.3
5q14.3
5q15
5q15-5q21.1
5q21.1
5q21.1-5q21.2
5q21.2
5q21.3
5q22.1
5q22.1-5q22.2
5q22.2
5q22.3
5q22.3-5q23.1
5q23.1
5q23.1-5q23.2
5q23.2
5q23.2-5q23.3
5q23.3
5q23.3-5q31.1
5q31.1
5q31.2
5q31.2-5q31.3
5q31.3
5q32
5q33.1
5q33.2
5q33.2-5q33.3
5q33.3
5q33.3-5q34
5q34
5q34-5q35.1
5q35.1
5q35.2
5q35.2-5q35.3
5q35.3
6p11.2
6p11.2-6p12.1
6p12.1
6p12.1-6p12.2
6p12.2
6p12.2-6p12.3
6p12.3
6p12.3-6p21.1
6p21.1
6p21.1-6p21.2
6p21.2
6p21.2-6p21.31
6p21.31
6p21.32
6p21.33
6p22.1
6p22.2
6p22.2-6p22.3
6p22.3
6p23
6p23-6p24.1
6p24.1
6p24.1-6p24.2
6p24.2
6p24.2-6p24.3
6p24.3
6p24.3-6p25.1
6p25.1
6p25.2
6p25.3
6q11.1
6q12
6q12-6q13
6q13
6q13-6q14.1
6q14.1
6q14.1-6q14.2
6q14.2
6q14.2-6q14.3
6q14.3
6q14.3-6q15
6q15
6q16.1
6q16.2
6q16.3
6q16.3-6q21
6q21
6q21-6q22.1
6q22.1
6q22.1-6q22.31
6q22.2
6q22.31
6q22.32
6q22.32-6q22.33
6q22.33
6q23.1
6q23.1-6q23.2
6q23.2
6q23.3
6q24.1
6q24.2
6q24.3
6q25.1
6q25.1-6q25.2
6q25.2
6q25.2-6q25.3
6q25.3
6q25.3-6q26
6q26
6q27
7p11.2
7p11.2-7p12.1
7p12.1
7p12.2
7p12.3
7p13
7p13-7p14.1
7p14.1
7p14.1-7p14.2
7p14.2
7p14.2-7p14.3
7p14.3
7p14.3-7p15.1
7p15.1
7p15.1-7p15.2
7p15.2
7p15.3
7p15.3-7p21.1
7p21.1
7p21.2
7p21.3
7p21.3-7p22.1
7p22.1
7p22.2
7p22.2-7p22.3
7p22.3
7q11.21
7q11.22
7q11.22-7q11.23
7q11.23
7q11.23-7q21.11
7q21.11
7q21.11-7q21.12
7q21.12
7q21.13
7q21.13-7q21.2
7q21.2
7q21.3
7q21.3-7q22.1
7q22.1
7q22.1-7q22.2
7q22.2
7q22.2-7q22.3
7q22.3
7q22.3-7q31.1
7q31.1
7q31.1-7q31.2
7q31.2
7q31.2-7q31.31
7q31.31
7q31.31-7q31.32
7q31.32
7q31.32-7q31.33
7q31.33
7q32.1
7q32.2
7q32.2-7q32.3
7q32.3
7q32.3-7q33
7q33
7q33-7q34
7q34
7q34-7q35
7q35
7q35-7q36.1
7q36.1
7q36.2
7q36.2-7q36.3
7q36.3
8p11.1
8p11.21
8p11.22
8p11.22-8p11.23
8p11.23
8p12
8p12-8p21.1
8p21.1
8p21.1-8p21.2
8p21.2
8p21.2-8p21.3
8p21.3
8p22
8p23.1
8p23.2
8p23.2-8p23.3
8p23.3
8q11.1
8q11.21
8q11.22-8q11.23
8q11.23
8q11.23-8q12.1
8q12.1
8q12.1-8q12.2
8q12.2
8q12.3
8q13.1
8q13.1-8q13.2
8q13.2
8q13.2-8q13.3
8q13.3
8q21.11
8q21.12
8q21.13
8q21.2
8q21.3
8q22.1
8q22.1-8q22.2
8q22.2
8q22.2-8q22.3
8q22.3
8q23.1
8q23.1-8q23.2
8q23.2
8q23.3
8q23.3-8q24.11
8q24.11
8q24.12
8q24.13
8q24.21
8q24.22
8q24.23
8q24.23-8q24.3
8q24.3
9p11.1-9p11.2
9p11.2
9p12
9p12-9p13.1
9p13.1
9p13.2
9p13.2-9p13.3
9p13.3
9p21.1
9p21.1-9p21.2
9p21.2
9p21.3
9p22.1
9p22.1-9p22.2
9p22.2
9p22.2-9p22.3
9p22.3
9p22.3-9p23
9p23
9p23-9p24.1
9p24.1
9p24.1-9p24.2
9p24.2
9p24.2-9p24.3
9p24.3
9q12
9q13
9q21.11
9q21.11-9q21.12
9q21.12
9q21.12-9q21.13
9q21.13
9q21.2
9q21.31
9q21.32
9q21.32-9q21.33
9q21.33
9q21.33-9q22.1
9q22.1
9q22.2
9q22.2-9q22.31
9q22.31
9q22.32
9q22.32-9q22.33
9q22.33
9q22.33-9q31.1
9q31.1
9q31.1-9q31.2
9q31.2
9q31.3
9q31.3-9q32
9q32
9q33.1
9q33.2
9q33.2-9q33.3
9q33.3
9q33.3-9q34.11
9q34.11
9q34.11-9q34.12
9q34.12
9q34.12-9q34.13
9q34.13
9q34.2
9q34.2-9q34.3
9q34.3
10p11.1
10p11.21
10p11.21-10p11.22
10p11.22
10p11.22-10p11.23
10p11.23
10p11.23-10p12.1
10p12.1
10p12.1-10p12.2
10p12.2
10p12.2-10p12.31
10p12.31
10p12.31-10p12.33
10p12.33
10p12.33-10p13
10p13
10p13-10p14
10p14
10p14-10p15.1
10p15.1
10p15.1-10p15.2
10p15.2
10p15.3
10q11.21
10q11.22
10q11.22-10q11.23
10q11.23
10q11.23-10q21.1
10q21.1
10q21.2
10q21.2-10q21.3
10q21.3
10q21.3-10q22.1
10q22.1
10q22.1-10q22.2
10q22.2
10q22.2-10q22.3
10q22.3
10q22.3-10q23.1
10q23.1
10q23.1-10q23.2
10q23.2
10q23.2-10q23.31
10q23.31
10q23.32
10q23.32-10q23.33
10q23.33
10q23.33-10q24.1
10q24.1
10q24.1-10q24.2
10q24.2
10q24.2-10q24.31
10q24.31
10q24.31-10q24.32
10q24.32
10q24.32-10q24.33
10q24.33
10q24.33-10q25.1
10q25.1
10q25.2
10q25.2-10q25.3
10q25.3
10q25.3-10q26.11
10q26.11
10q26.11-10q26.12
10q26.12
10q26.13
10q26.13-10q26.2
10q26.2
10q26.3
11p11.12
11p11.2
11p11.2-11p12
11p12
11p12-11p13
11p13
11p13-11p14.1
11p14.1
11p14.2
11p14.3
11p15.1
11p15.1-11p15.2
11p15.2
11p15.2-11p15.3
11p15.3
11p15.3-11p15.4
11p15.4
11p15.4-11p15.5
11p15.5
11q11
11q12.1
11q12.2
11q12.2-11q12.3
11q12.3
11q12.3-11q13.1
11q13.1
11q13.1-11q13.2
11q13.2
11q13.3
11q13.3-11q13.4
11q13.4
11q13.4-11q13.5
11q13.5
11q13.5-11q14.1
11q14.1
11q14.1-11q14.2
11q14.2
11q14.2-11q14.3
11q14.3
11q21
11q22.1
11q22.1-11q22.2
11q22.2
11q22.3
11q23.1
11q23.2
11q23.3
11q24.1
11q24.1-11q24.2
11q24.2
11q24.3
11q25
12p11.1
12p11.21
12p11.22
12p11.22-12p11.23
12p11.23
12p11.23-12p12.1
12p12.1
12p12.1-12p12.2
12p12.2
12p12.3
12p12.3-12p13.1
12p13.1
12p13.1-12p13.2
12p13.2
12p13.31
12p13.32
12p13.32-12p13.33
12p13.33
12q12
12q13.11
12q13.11-12q13.12
12q13.12
12q13.12-12q13.13
12q13.13
12q13.13-12q13.2
12q13.2
12q13.2-12q13.3
12q13.3
12q13.3-12q14.1
12q14.1
12q14.1-12q14.2
12q14.2
12q14.3
12q14.3-12q15
12q15
12q21.1
12q21.1-12q21.2
12q21.2
12q21.2-12q21.31
12q21.31
12q21.31-12q21.32
12q21.32
12q21.33
12q22
12q23.1
12q23.1-12q23.2
12q23.2
12q23.2-12q23.3
12q23.3
12q24.11
12q24.11-12q24.12
12q24.12
12q24.12-12q24.13
12q24.13
12q24.13-12q24.21
12q24.21
12q24.22
12q24.22-12q24.23
12q24.23
12q24.23-12q24.31
12q24.31
12q24.31-12q24.32
12q24.32
12q24.32-12q24.33
12q24.33
13q11
13q11-13q12.11
13q12.11
13q12.12
13q12.12-13q12.13
13q12.13
13q12.2
13q12.2-13q12.3
13q12.3
13q13.1
13q13.1-13q13.2
13q13.2
13q13.2-13q13.3
13q13.3
13q13.3-13q14.11
13q14.11
13q14.12
13q14.12-13q14.13
13q14.13
13q14.13-13q14.2
13q14.2
13q14.2-13q14.3
13q14.3
13q21.1
13q21.2
13q21.31
13q21.32
13q21.33
13q21.33-13q22.1
13q22.1
13q22.2
13q22.2-13q22.3
13q22.3
13q22.3-13q31.1
13q31.1
13q31.2
13q31.3
13q31.3-13q32.1
13q32.1
13q32.1-13q32.2
13q32.2
13q32.2-13q32.3
13q32.3
13q32.3-13q33.1
13q33.1
13q33.2
13q33.3
13q34
14q11.2
14q11.2-14q12
14q12
14q12-14q13.1
14q13.1
14q13.1-14q13.2
14q13.2
14q13.3
14q13.3-14q21.1
14q21.1
14q21.2
14q21.3
14q21.3-14q22.1
14q22.1
14q22.1-14q22.2
14q22.2
14q22.2-14q22.3
14q22.3
14q23.1
14q23.1-14q23.2
14q23.2
14q23.2-14q23.3
14q23.3
14q24.1
14q24.1-14q24.2
14q24.2
14q24.2-14q24.3
14q24.3
14q24.3-14q31.1
14q31.1
14q31.2
14q31.3
14q31.3-14q32.11
14q32.11
14q32.11-14q32.12
14q32.12
14q32.12-14q32.13
14q32.13
14q32.2
14q32.31
14q32.32
14q32.32-14q32.33
14q32.33
15q11.1
15q11.1-15q11.2
15q11.2
15q12
15q12-15q13.1
15q13.1
15q13.1-15q13.2
15q13.2
15q13.2-15q13.3
15q13.3
15q14
15q14-15q15.1
15q15.1
15q15.1-15q15.2
15q15.2
15q15.2-15q15.3
15q15.3
15q15.3-15q21.1
15q21.1
15q21.1-15q21.2
15q21.2
15q21.2-15q21.3
15q21.3
15q21.3-15q22.1
15q22.1
15q22.1-15q22.2
15q22.2
15q22.31
15q22.32
15q22.33
15q22.33-15q23
15q23
15q23-15q24.1
15q24.1
15q24.1-15q24.2
15q24.2
15q24.2-15q24.3
15q24.3
15q24.3-15q25.1
15q25.1
15q25.2
15q25.2-15q25.3
15q25.3
15q26.1
15q26.1-15q26.2
15q26.2
15q26.2-15q26.3
15q26.3
16p11.1
16p11.1-16p11.2
16p11.2
16p12.1
16p12.1-16p12.2
16p12.2
16p12.2-16p12.3
16p12.3
16p13.11
16p13.12
16p13.12-16p13.13
16p13.13
16p13.13-16p13.2
16p13.2
16p13.3
16q11.2
16q11.2-16q12.1
16q12.1
16q12.1-16q12.2
16q12.2
16q13
16q13-16q21
16q21
16q21-16q22.1
16q22.1
16q22.1-16q22.2
16q22.2
16q22.2-16q22.3
16q22.3
16q23.1
16q23.1-16q23.2
16q23.2
16q23.2-16q23.3
16q23.3
16q23.3-16q24.1
16q24.1
16q24.2
16q24.2-16q24.3
16q24.3
17p11.2
17p11.2-17p12
17p12
17p12-17p13.1
17p13.1
17p13.1-17p13.2
17p13.2
17p13.2-17p13.3
17p13.3
17q11.1
17q11.1-17q11.2
17q11.2
17q12
17q12-17q21.1
17q21.1
17q21.1-17q21.2
17q21.2
17q21.2-17q21.31
17q21.31
17q21.32
17q21.32-17q21.33
17q21.33
17q21.33-17q22
17q22
17q23.1
17q23.1-17q23.2
17q23.2
17q23.2-17q23.3
17q23.3
17q23.3-17q24.1
17q24.1
17q24.2
17q24.2-17q24.3
17q24.3
17q24.3-17q25.1
17q25.1
17q25.1-17q25.2
17q25.2
17q25.2-17q25.3
17q25.3
18p11.21
18p11.22
18p11.22-18p11.23
18p11.23
18p11.23-18p11.31
18p11.31
18p11.31-18p11.32
18p11.32
18q11.1
18q11.1-18q11.2
18q11.2
18q11.2-18q12.1
18q12.1
18q12.1-18q12.2
18q12.2
18q12.2-18q12.3
18q12.3
18q12.3-18q21.1
18q21.1
18q21.1-18q21.2
18q21.2
18q21.2-18q21.31
18q21.31
18q21.31-18q21.32
18q21.32
18q21.33
18q21.33-18q22.1
18q22.1
18q22.2
18q22.3
18q23
19p12
19p12-19p13.11
19p13.11
19p13.11-19p13.12
19p13.12
19p13.12-19p13.13
19p13.13
19p13.13-19p13.2
19p13.2
19p13.2-19p13.3
19p13.3
19q11
19q12
19q13.11
19q13.11-19q13.12
19q13.12
19q13.12-19q13.13
19q13.13
19q13.2
19q13.2-19q13.31
19q13.31
19q13.32
19q13.32-19q13.33
19q13.33
19q13.41
19q13.41-19q13.42
19q13.42
19q13.42-19q13.43
19q13.43
20p11.1
20p11.1-20p11.21
20p11.21
20p11.22
20p11.22-20p11.23
20p11.23
20p11.23-20p12.1
20p12.1
20p12.2
20p12.2-20p12.3
20p12.3
20p12.3-20p13
20p13
20q11.21
20q11.21-20q11.22
20q11.22
20q11.22-20q11.23
20q11.23
20q11.23-20q12
20q12
20q12-20q13.11
20q13.11
20q13.11-20q13.12
20q13.12
20q13.12-20q13.13
20q13.13
20q13.2
20q13.2-20q13.31
20q13.31
20q13.32
20q13.32-20q13.33
20q13.33
21p11.1
21p11.1-21p11.2
21p11.2
21q11.2
21q11.2-21q21.1
21q21.1
21q21.2
21q21.2-21q21.3
21q21.3
21q22.11
21q22.11-21q22.12
21q22.12
21q22.13
21q22.13-21q22.2
21q22.2
21q22.2-21q22.3
21q22.3
22q11.1
22q11.1-22q11.21
22q11.21
22q11.21-22q11.22
22q11.22
22q11.22-22q11.23
22q11.23
22q11.23-22q12.1
22q12.1
22q12.2
22q12.2-22q12.3
22q12.3
22q12.3-22q13.1
22q13.1
22q13.1-22q13.2
22q13.2
22q13.2-22q13.31
22q13.31
22q13.32
22q13.33
Xp11.21
Xp11.21-Xp11.22
Xp11.22
Xp11.22-Xp11.23
Xp11.23
Xp11.23-Xp11.3
Xp11.3
Xp11.3-Xp11.4
Xp11.4
Xp21.1
Xp21.1-Xp21.2
Xp21.2
Xp21.2-Xp21.3
Xp21.3
Xp21.3-Xp22.11
Xp22.11
Xp22.11-Xp22.12
Xp22.12
Xp22.13
Xp22.13-Xp22.2
Xp22.2
Xp22.2-Xp22.31
Xp22.31
Xp22.31-Xp22.32
Xp22.32
Xp22.33
Xq11.1
Xq11.1-Xq11.2
Xq11.2
Xq12
Xq13.1
Xq13.1-Xq13.2
Xq13.2
Xq13.3
Xq13.3-Xq21.1
Xq21.1
Xq21.1-Xq21.2
Xq21.2
Xq21.31
Xq21.31-Xq21.32
Xq21.32
Xq21.33
Xq22.1
Xq22.2
Xq22.3
Xq22.3-Xq23
Xq23
Xq24
Xq25
Xq25-Xq26.1
Xq26.1
Xq26.2
Xq26.2-Xq26.3
Xq26.3
Xq26.3-Xq27.1
Xq27.1
Xq27.2
Xq27.3
Xq27.3-Xq28
Xq28
Yp11.2
Yp11.31
Yp11.31-Yp11.32
Yp11.32
Yq11.1
Yq11.21
Yq11.221
Yq11.222
Yq11.223
Yq11.23
Yq12
Location
start
end
Strand
+
-
Length
<=
(bp)
CDS Length
<=
(a.a.)
3. Alternative splicing (AS) variants
Search for the identified alternative splicing variants and alternative splicing patterns. [
more
]
example:
Number of representative AS variants (RASVs)
<=
Splice site
GT-AG
AT-AC
GC-AG
other
AS location
5'-end
internal
3'-end
5'-UTR
CDS
3'-UTR
=AS pattern
Cassette
Internal acceptor
Internal donor
Mutually exclusive
Retained Intron
4. Non-coding functional RNAs
Search for the classification of non-ptotein-coding transcript (ncRNA) and long/short type annotation. [
more
]
example:
Classification of ncRNA
Identical to known ncRNA
Similar to known ncRNA
Putative ncRNA
Uncharacterized transcript
Unclassifiable transcript
Type
short
long
Relation to fRNAdb
fRNAdb ID(FR ID)
e.g. FR313620
fRNAdb Accession
(FR ACC)
e.g. DQ581678
Overlap feature with
H-InvDB entries
Overlap feature
CDS
5'UTR
3'UTR
Overlap region
exon
intron
Strand
sense
anti-sense
5. Protein functions
Search for the human-curated functional definition, similarity category and related evidences; Gene name; HUGO gene symbols; EC number and gene ontology (GO) annotation of molecular function. [
more
]
example:
Definition
Similarity category
Identical to known human protein (Category I)
Similar to known protein (Category II)
IPR domain containing protein(Category III)
Conserved hypothetical protein (Category IV)
Hypothetical protein (Category V)
Hypothetical short protein (Category VI)
Pseudogene candidate (Category VII)
Gene name/symbol
e.g. ASB3
Protein name
e.g. Ig kappa chain C region.
EC name
e.g. EC 2.4.1.22 or lactose synthase
GO: molecular function
e.g. nucleic acid binding
6. Functional domains
Search for the location, ID and descriptions of functional domains (InterPro). [
more
]
example:
InterPro domain ID
e.g. IPR001675
InterPro domain name
e.g. Sialyltransferase
Domain type
Family
Domain
PTM
Active_site
Binding_site
Repeat
Length
<=
(a.a.)
7. Subcellular localization
Search for the subcellular localization prediction by WolfPSORT, Target P, SOSUI, TMHMM PTS1, and gene ontology (GO) annotation of cellular component. [
more
]
example:
WoLF PSORT
cytosol
cytoskeleton
endoplasmic reticulum
extracellular
golgi apparatus
lysosome
mitochondria
nuclear
peroxisome
plasma membrane
other
TargetP
mitochondria (mTP)
signal peptide (SP)
other
SOSUI
Transmembrane
Soluble
TMHMM
Transmembrane
Soluble
GO: cellular component
e.g. nuclear exosome
8. Metabolic pathways
Search for the metabolic pathway information (KEGG) and gene ontology (GO) annotation of biological process. [
more
]
example:
KEGG pathway ID
e.g. 00052
KEGG pathway name
e.g. Galactose
GO: bilogical process
e.g. RNA processing
9. Protein 3D structures
Search for the assigned PDB and SCOP IDs by GTOP. [
more
]
example:
PDB ID
e.g. 1adeA
SCOP ID
e.g. d.169.1.4
% ID
<=
(%)
% COV
<=
(%)
10. Genetic polymorphisms
Search for the polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and copy number variation (CNV). [
more
]
example:
Types of variation
SNP
Indel
Microsatelite(STR)
Copy number variation(CNV)
Feature of variation
5'-UTR
CDS
3'-UTR
synonymous
nonsynonymous
11. Gene expression
Search for the tissue-specific expression in 10 tissue categories determined by iAFLP data (JBIRC), Affimetrix probe information and promotor motif. [
more
]
example:
Tissue-specific expression
% expression:
>=75%
>=50%
>=25%
in
neural
blood/spleen/LND
dermal_connective
placenta/testis/ovary
muscle/heart
stomach/colon
liver
lung
kidney/bladder
endocrine/exocrine
Probe
Affimetrix probe ID:
e.g. 200644_at
Promoter
[help]
Promoter motif
upstream of TSS
<=
(bp)
Anti-sense cluster
yes
no
12. Relation with diseases
Search for the known disease-related genes and co-localized orphan pathology with the name of the disease and OMIM ID. [
more
]
example:
OMIM ID
e.g. 104170
Disease name
e.g. Gastric cancer
OMIM
yes
no
MutationView
yes
no
13. Molecular evolution
Search for the orthologs and the genome conservation of human genes against 13 model organisms. [
more
]
example:
Species
Pan troglodytes (chimpanzee)
Macaca sp. (macaque)
Mus musculus (mouse)
Rattus norvegicus (rat)
Canis familiaris (dog)
Bos taurus (cow)
Monodelphis domestica (opossum)
Gallus gallus (chicken)
Danio rerio (zebrafish)
Tetraodon nigroviridis (tetraodon)
Takifugu rubripes (fugu)
Equus caballus (Horse)
Oryzias Latipes (Medaka)
Pongo sp. (Orangutan)
Ortholog data
yes
no
protein identity
<=
(%)
Genome conservation
yes
no at
Transcribed region
Exon region
ultraconserved element (UCE) in exon or intron (100% identity and 200 bp)
14. Protein-protein interactions
Search for the human protein-protein interactions (PPIs). [
more
]
example:
Number of interacting partners
<=
15. Gene families/groups
Search for the gene family/groups. [
more
]
example:
Immunoglobulin (Ig)
Major histocompatibility complex (MHC)
T-cell receptor (TCR)
Olfactory receptor (OR)
e.g. Rhodopsin-like GPCR superfamily
16. Transcript info.
Search for the quality related features; NMD, pseudogene, repeat and readthrough. [
more
]
example:
Mol_type
genomic DNA
genomic RNA
mRNA
pre-RNA
scRNA
snRNA
snoRNA
unassigned DNA
unassigned RNA
predicted transcript(eHIT)
predicted transcript(pHIT)
Sequence data provider
CHGC
DKFZ/MIPS
FLJ/HRI
FLJ/IMSUT
FLJ/KDRI
KDRI
MGC/NCI
other
Curation status
Human curated
Auto-annotated
Feature
NMD
Readthrough
Repeat
Coding potential
Protein-coding transcripts
Non-protein-coding transcripts
Pseudogene candidates