MEDALS is a portal site that provides various information on databases and analysis tools for life science which were developed by the projects directly sponsored by METI, or developed by the Institutes sponsored by METI.
Hyperlink Management System is a tool for automatically updating and maintaining hyperlinks among major biological databases. We update correspondence tables of data IDs daily.
H-InvDB provides annotation items for each HIX (H-Invitational cluster) in Locus view, such as genome mapping, gene structure, alternative splicing variants, gene-expression profiles, disease related information, etc.
H-InvDB provides annotation items for each HIT (H-Invitational transcript) in Transcript view, such as gene function, predicted CDS, InterProScan, GO, subcellular localization, protein 3D structure (GTOP), evolutionary analysis, etc. The previous name for the view was cDNA view (mRNA view).
H-InvDB newly provides annotation items for each HIP (H-Invitational protein) in Protein view, such as protein function, subcellular localization, post-translational modification (PTM), protein 3D structure (GTOP), protein-protein interaction (PPI), etc.
G-integra is an original genome browser, in which we can browse physical maps of human, mouse, rat, chimpanzee, etc. genome and the gene structures.
H-ANGEL is a database of expression profiles of human genes. Gene expression data in normal adult human tissues that were generated by three types of methods and in seven different platforms were collected and categorized into 10 and 40 major tissues
PCDq is a database of a comprehensive annotation of human protein-protein interaction (PPI), together with the protein complexes identified from the PPI network from six PPI databases.
H-EPD provides comprehensive, non-redundant human protein sequences, including both curated and predicted human proteins. It was made by merging H-Inv proteins (predicted from transcriptome) with UniProtKB/Swiss-Prot and RefSeq proteins (curated). H-EPD was designed as a reference database for human proteome research.
LEGENDA Literature-Extracted GENe-Disease Associations
LEGENDA stands for Literature-Extracted GENe-Disease Associations. It is a database that was built based on the extraction of the relations between genes, diseases, and substances from the entire MEDLINE titles and abstracts.
TACT is a web-based automated prediction tool of functional annotation that was newly developed by integrating ORF prediction, similarity search (BLASTX and FASTY) and motif prediction (InterProScan) programs.
VarySysDB database of annotated human polymorphism
H-DBAS is a database of human alternative splicing variants. The representative AS variants (RASV) were selected among the cluster of AS variants which have the same genomic (exon-intron) structure.
It offers annotated human polymorphism information of single nucleotide polymorphisms (SNPs) on splice sites and transcripts, deletion-insertion polymorphisms (DIPs), short tandem repeats (STRs), single amino acid repeats (SARs), structural variation (or copy number variations: CNVs), linkage disequilibrium regions, and their relations to the genome, transcripts, and functional domains.
G-compass is a web tool for comparative genomics, which can browse conserved regions based on the genome alignments of human-chimpanzee, human-mouse and human-rat. This provides BLAST search against the conserved regions and Keyword search by Gene symbol etc. Sliding window analysis of substitution rates and GC contents for each conserved region can be graphically shown in the Main view.
H-InvDB Web service provide the various SOAP and REST APIs to use H-InvDB data.
Any one can use the servise to develop the application using H-InvDB Web service.