Publication of H-Invitational project
The main paper:
H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery. Takeda J, et al. (2013)
Nucleic Acids Research Jan;41(Database issue):D915-9.
- H-InvDB in 2009: extended database and data mining resources for human genes and transcripts. Yamasaki C, et al. (2010)
Nucleic Acids Research Jan;38(Database issue):D626-32.
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Yamasaki C, et al. (2008)
Nucleic Acids Research 36, Database issue D793-D799.
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones. T. Imanishi et al. (2004)
PLoS Biology 2 (6), 856-875.
VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts.
Shimada MK, et al. (2008)
Nucleic Acids Research 37(Database issue):D810-5
Distribution and effects of nonsense polymorphisms in human genes.
Yamaguchi-Kabata Y, et al. (2008)
Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs
Takeda J, et al. (2008)
Nucleic Acids Research2008 Nov;36(20):6386-95.
Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes. Nakagawa S, et al. (2008)
Nucleic Acids Research
Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees. Matsuya A, et al. (2008)
Nucleic Acids Research 36, Database issue D787-D792.
Mapping of chimpanzee full-length cDNAs onto the human genome unveils large potential divergence of the transcriptome. Sakate R, et al. (2007)
Gene 399(1): 1-10.
Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes. Sakai H, et al. (2007)
Gene 389(2) 196-203.
H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational. Takeda, J. et al. (2007)
Nucleic Acids Research 35, Database issue D104-D109.
Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs. Takeda, J. et al. (2006)
Nucleic Acids Research 34 (14), 3917-3928.
Alternative splicing in human transcriptome: Functional and structural influence on proteins. Yura, K. et al. (2006)
Gene 380 (2), 63-71.
TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB, Yamasaki C. et al. (2006)
Nucleic Acids Research 34 Web Server issue W345-W349.
Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational Database (H-InvDB). Yamasaki C. et al. (2005)
Gene 364, 99-107.
A web tool for comparative genomics: G-compass. Fujii Y. et al.(2005)
Gene 364, 45-52.
Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system. Koyanagi K.O. et al. (2005)
Gene 353 (2), 169-176.
Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals M. Nakao et al. (2005)
Nucleic Acids Research 33 (8), 2355-2363.
The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. M. Tanino et al. (2005)
Nucleic Acids Research 33 Database issue, D567-D572.