Download file format of G-compass genome alignments (tab delimited)

ColumnDescription
1Target genome: "pt2", "rm2", etc. (cf. Reference genome is human "hg18".)
2Alignment ID (ex. "Hs6COX-0000089676_Pt0006-0029178029_+")
3Chromosome of reference genome
4Chromosome of target genome
5Strand of target genome ("+" or "-")
6Not used (always "0")
7Original alignment ID (cf. Alignments were originated from reciprocal blastz execution.)
8Start point on the chromosome of reference genome (Start < End)
9End point on the chromosome of reference genome (Start < End)
10Start point on the chromosome of target genome (Start < End)
11End point on the chromosome target genome (Start < End)
12Aligned nucleotide sequence of reference genome
13Aligned nucleotide sequence of target genome
14Blastz score
15Number of identical sites
16Length of alignment including gaps
17Identity (= column 15 / column 16)

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